Browse Element(s) Details


OsAffx.3000.1.S1_at

Description tigr:9630.m04750
TID=OsAffx.3000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4869011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed
LOC_Os02g48680Os.20168.1.S1_at11/112+29794850..29795810expressed protein
LOC_Os02g48680OsAffx.24787.1.S1_at1/112+29794850..29795810expressed protein
LOC_Os02g48690OsAffx.3000.1.S1_at11/112+29799417..29802234expressed protein
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein
LOC_Os02g48710NANA2+29807417..29807626expressed protein
LOC_Os02g48720Os.9282.1.S1_at11/112+29816067..29819384ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g48730Os.7581.1.S1_at11/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48730Os.23086.1.S1_x_at1/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48730Os.23086.2.S1_x_at1/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3000.1.S1_at--560--7271Chr02:29801336..29801360 (25 bp)
GTGCCAAGCTGCAGGCATCGAATGT
LOC_Os02g48690
OsAffx.3000.1.S1_at--43--3551Chr02:29801351..29801375 (25 bp)
CATCGAATGTGAGGCGGCTCAGCCA
LOC_Os02g48690
OsAffx.3000.1.S1_at--897--8651Chr02:29801740..29801764 (25 bp)
TGTGGCGCCTGCGTGGAACCCCTTG
LOC_Os02g48690
OsAffx.3000.1.S1_at--953--9451Chr02:29801814..29801838 (25 bp)
TCTGGAGGTCCGTGAACAAGGGTTC
LOC_Os02g48690
OsAffx.3000.1.S1_at--73--10711Chr02:29801890..29801914 (25 bp)
TTGCGATTCGTTTTCCTCACTGTGC
LOC_Os02g48690
OsAffx.3000.1.S1_at--918--3991Chr02:29801898..29801922 (25 bp)
CGTTTTCCTCACTGTGCGTGTCGTG
LOC_Os02g48690
OsAffx.3000.1.S1_at--674--3991Chr02:29801914..29801938 (25 bp)
CGTGTCGTGGTTTCGCCTTTTGCGG
LOC_Os02g48690
OsAffx.3000.1.S1_at--875--5731Chr02:29801943..29801967 (25 bp)
GACGGCTCTACGTGACCGTGGCGCA
LOC_Os02g48690
OsAffx.3000.1.S1_at--442--5831Chr02:29801956..29801980 (25 bp)
GACCGTGGCGCAGCGACAATGACAA
LOC_Os02g48690
OsAffx.3000.1.S1_at--1010--2211Chr02:29801971..29801995 (25 bp)
ACAATGACAATGACTGCCGCGGCGA
LOC_Os02g48690
OsAffx.3000.1.S1_at--743--4351Chr02:29802004..29802028 (25 bp)
CCAGACGACGATAGTCGCGGCGGAT
LOC_Os02g48690
Target Sequence 
GTGCCAAGCTGCAGGCATCGAATGTGAGGCGGCTCAGCCAGGAGGAGTTGAGGCCTAGGGAGGCCCCTGGCCCATGTGGC
GCCTGCGTGGAACCCCTTGGCCGCGCCAACAACAGCCTCCACGTCGCAGGCGACGTCCGGCGGGAGCTTCTGGAGGTCCG
TGAACAAGGGTTCATCCTCCTCGCCATCACCACCGCCACCGGCATGGCAGGAATTGATTGGGACTTGCGATTCGTTTTCC
TCACTGTGCGTGTCGTGGTTTCGCCTTTTGCGGTGGCGACGGCTCTACGTGACCGTGGCGCAGCGACAATGACAATGACT
GCCGCGGCGAACGGTGGCCCAGACGACGATAGTCGCGGCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis