Browse Element(s) Details


Os.9282.1.S1_at

Description gb:D12637.1
DB_XREF= gi:218144
TID=Os.9282.1
CNT=127
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.9282 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ATPADP translocator, complete cds.
PROD=ATPADP translocator
FL= gb:AK119207.1 gb:D12637.1 gb:AK073448.1 gb:AK100143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4872011/11ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed
LOC_Os02g48680Os.20168.1.S1_at11/112+29794850..29795810expressed protein
LOC_Os02g48680OsAffx.24787.1.S1_at1/112+29794850..29795810expressed protein
LOC_Os02g48690OsAffx.3000.1.S1_at11/112+29799417..29802234expressed protein
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein
LOC_Os02g48710NANA2+29807417..29807626expressed protein
LOC_Os02g48720Os.9282.1.S1_at11/112+29816067..29819384ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g48730Os.7581.1.S1_at11/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48730Os.23086.1.S1_x_at1/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48730Os.23086.2.S1_x_at1/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48740Os.23544.1.S1_at11/112+29827488..29832167Fimbrin-like protein 2, putative, expressed
LOC_Os02g48750OsAffx.24789.1.S1_at11/112+29838720..29839364hypothetical protein
LOC_Os02g48760OsAffx.24790.1.S1_at11/112+29842034..29842519hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0015865biological_processpurine nucleotide transport
GO:0005739cellular_componentmitochondrion
GO:0005740cellular_componentmitochondrial envelope
GO:0005743cellular_componentmitochondrial inner membrane
GO:0016020cellular_componentmembrane
GO:0005471molecular_functionATP:ADP antiporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9282.1.S1_at--886--2691Chr02:29818665..29818689 (25 bp)
AAGCTTTGCCCTTGGGTGGCTGATC
LOC_Os02g48720
Os.9282.1.S1_at--944--4311Chr02:29818718..29818742 (25 bp)
CCATTGATACCGTCCGCAGAAGGAT
LOC_Os02g48720
Os.9282.1.S1_at--128--2231Chr02:29818772..29818796 (25 bp)
ACAAGAGCTCCATGGATGCTTTCTC
LOC_Os02g48720
Os.9282.1.S1_at--885--9191Chr02:29818818..29818842 (25 bp)
TGCCAAGTCACTGTTCAAGGGTGCT
LOC_Os02g48720
Os.9282.1.S1_at--1048--2491Chr02:29818849..29818873 (25 bp)
AACATCCTACGTGCCATTGCTGGTG
LOC_Os02g48720
Os.9282.1.S1_at--993--2451Chr02:29818968..29818992 (25 bp)
AACAAGTGTTTATTCCTGGTCCTGC
LOC_Os02g48720
Os.9282.1.S1_at--197--8611Chr02:29818984..29819008 (25 bp)
TGGTCCTGCACTAACGGGATCTGGT
LOC_Os02g48720
Os.9282.1.S1_at--32--8191Chr02:29819085..29819109 (25 bp)
GGAAGCGTTTATCTCCAAACATTGT
LOC_Os02g48720
Os.9282.1.S1_at--510--8371Chr02:29819120..29819144 (25 bp)
GGCGTTAATCGCAAACAGTTTACCA
LOC_Os02g48720
Os.9282.1.S1_at--1082--8311Chr02:29819176..29819200 (25 bp)
GGCTCTGTTATGTCTGGCGATTTTC
LOC_Os02g48720
Os.9282.1.S1_at--373--8371Chr02:29819191..29819215 (25 bp)
GGCGATTTTCCTACCATACATTACC
LOC_Os02g48720
Target Sequence 
AAGCTTTGCCCTTGGGTGGCTGATCACCAACGGTGCAGGTCTTGCCTCTTACCCCATTGATACCGTCCGCAGAAGGATGA
TGATGACCTCTGGAGAGGCTGTCAAGTACAAGAGCTCCATGGATGCTTTCTCCCAGATCCTGAAGAACGAGGGTGCCAAG
TCACTGTTCAAGGGTGCTGGTGCCAACATCCTACGTGCCATTGCTGGTGCTGGTGTGCTCTCAGGNTATGACCAGCTGCA
GATCCTCTTCTTTGGAAAGAAGTACGGCTCGGGCGGTGCCTAAACTGGCAGAAAATGATGACGAACAAGTGTTTATTCCT
GGTCCTGCACTAACGGGATCTGGTGAATTTTGCCTTTTTAACATTGAAAACAATAATAATTCTTGTAGGGGAGAACACTC
CCCGACATTCGTTTTTTGGTGGAAGCGTTTATCTCCAAACATTGTCATAGGCGGAGGCGTTAATCGCAAACAGTTTACCA
TCATAGGGTTGAGTTTGAGTTGAGTCTGGCCGGCTCTGTTATGTCTGGCGATTTTCCTACCATACATTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis