Browse Element(s) Details


OsAffx.24789.1.S1_at

Description tigr:9630.m04758
TID=OsAffx.24789.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4875011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48720Os.9282.1.S1_at11/112+29816067..29819384ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g48730Os.7581.1.S1_at11/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48730Os.23086.1.S1_x_at1/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48730Os.23086.2.S1_x_at1/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48740Os.23544.1.S1_at11/112+29827488..29832167Fimbrin-like protein 2, putative, expressed
LOC_Os02g48750OsAffx.24789.1.S1_at11/112+29838720..29839364hypothetical protein
LOC_Os02g48760OsAffx.24790.1.S1_at11/112+29842034..29842519hypothetical protein
LOC_Os02g48770Os.11812.1.S1_at11/112+29844503..29846574SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os02g48780NANA2+29847702..29848589BAG domain containing protein, expressed
LOC_Os02g48790Os.8968.2.S1_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.8968.1.S1_x_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.48165.1.A1_at9/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48800OsAffx.3002.1.S1_at10/112+29862249..29863561expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24789.1.S1_at--986--8011Chr02:29838758..29838782 (25 bp)
GGAGGTCATCGAGGCTCTAGCACAC
LOC_Os02g48750
OsAffx.24789.1.S1_at--1066--911Chr02:29838769..29838793 (25 bp)
AGGCTCTAGCACACGCGCAGGCGGC
LOC_Os02g48750
OsAffx.24789.1.S1_at--470--1131Chr02:29838810..29839071 (25 bp)
AGTGCGATGGCGTTGCGGCCTTTCA
LOC_Os02g48750
OsAffx.24789.1.S1_at--1002--10631Chr02:29839063..29839083 (21 bp)
TTGCGGCCTTTCATGGCTTCGGGTT
LOC_Os02g48750
OsAffx.24789.1.S1_at--464--3491Chr02:29839070..29839094 (25 bp)
CATGGCTTCGGGTTCGACCGTCGAG
LOC_Os02g48750
OsAffx.24789.1.S1_at--906--1591Chr02:29839102..29839126 (25 bp)
AGCTCCTCCATTGCTTGTCTGTTGC
LOC_Os02g48750
OsAffx.24789.1.S1_at--1023--10791Chr02:29839116..29839140 (25 bp)
TTGTCTGTTGCCTCTAAGAAGCTCA
LOC_Os02g48750
OsAffx.24789.1.S1_at--415--9791Chr02:29839130..29839154 (25 bp)
TAAGAAGCTCACCAACGGCTACCAC
LOC_Os02g48750
OsAffx.24789.1.S1_at--1096--3251Chr02:29839142..29839166 (25 bp)
CAACGGCTACCACGGTGCCTGTTTC
LOC_Os02g48750
OsAffx.24789.1.S1_at--398--1591Chr02:29839278..29839302 (25 bp)
AGCTCGTGCCGCTCTGAGCCCGTGT
LOC_Os02g48750
OsAffx.24789.1.S1_at--923--9471Chr02:29839290..29839314 (25 bp)
TCTGAGCCCGTGTGTCGCCACCTGG
LOC_Os02g48750
Target Sequence 
GGAGGTCATCGAGGCTCTAGCACACGCGCAGGCGGCGCACACCGGGGATGGGAGTGCGATGGCGTTGCGGCCTTTCATGG
CTTCGGGTTCGACCGTCGAGGTCCTCCAGCTCCTCCATTGCTTGTCTGTTGCCTCTAAGAAGCTCACCAACGGCTACCAC
GGTGCCTGTTTCCACCTCTGTGCCCATCACTGCGGCGCCCGCCTGCGCCCAACCCGTCGCCGGCCGCCCTTTCCTGCCTC
GCCCCTCCAGCTGACCCACACGAGGGGTGCGGGGAGGCCGGCGAGCTCGTGCCGCTCTGAGCCCGTGTGTCGCCACCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis