Browse Element(s) Details


Os.23544.1.S1_at

Description gb:AK069715.1
DB_XREF= gi:32979739
TID=Os.23544.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031I15, full insert sequence.
FL= gb:AK069715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4874011/11Fimbrin-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein
LOC_Os02g48710NANA2+29807417..29807626expressed protein
LOC_Os02g48720Os.9282.1.S1_at11/112+29816067..29819384ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g48730Os.7581.1.S1_at11/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48730Os.23086.1.S1_x_at1/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48730Os.23086.2.S1_x_at1/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48740Os.23544.1.S1_at11/112+29827488..29832167Fimbrin-like protein 2, putative, expressed
LOC_Os02g48750OsAffx.24789.1.S1_at11/112+29838720..29839364hypothetical protein
LOC_Os02g48760OsAffx.24790.1.S1_at11/112+29842034..29842519hypothetical protein
LOC_Os02g48770Os.11812.1.S1_at11/112+29844503..29846574SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os02g48780NANA2+29847702..29848589BAG domain containing protein, expressed
LOC_Os02g48790Os.8968.2.S1_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.8968.1.S1_x_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.48165.1.A1_at9/112+29853420..29861569AML1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23544.1.S1_at--1161--851Chr02:29831607..29831631 (25 bp)
ATGGCTTCGGATGCAGCTTCTGATA
LOC_Os02g48740
Os.23544.1.S1_at--279--71Chr02:29831631..29831655 (25 bp)
ATTGCTTCGGAGGACGCTGCTTCAA
LOC_Os02g48740
Os.23544.1.S1_at--1048--6551Chr02:29831782..29831806 (25 bp)
GATTACACGGGCTGTTCTTCTGTCC
LOC_Os02g48740
Os.23544.1.S1_at--1024--9551Chr02:29831797..29831821 (25 bp)
TCTTCTGTCCTGATAGCGGTTTTAT
LOC_Os02g48740
Os.23544.1.S1_at--1152--2011Chr02:29831831..29831855 (25 bp)
ACTAGTACCGTCATGGTGTCCAACG
LOC_Os02g48740
Os.23544.1.S1_at--1128--7451Chr02:29831846..29831870 (25 bp)
GTGTCCAACGTTTGCTGCCAGAAGT
LOC_Os02g48740
Os.23544.1.S1_at--679--9451Chr02:29831886..29831910 (25 bp)
TCTGTTCCAAGCCTACTTTTGAGGT
LOC_Os02g48740
Os.23544.1.S1_at--83--6491Chr02:29831936..29831960 (25 bp)
GATAGAGTTGCCGTTTGTTCATTTA
LOC_Os02g48740
Os.23544.1.S1_at--313--1251Chr02:29832008..29832032 (25 bp)
AGTTGGGCATTTCTTGTACTCTTAG
LOC_Os02g48740
Os.23544.1.S1_at--284--10791Chr02:29832059..29832083 (25 bp)
TTGTTTCCCGGACCTGTCAAAATGT
LOC_Os02g48740
Os.23544.1.S1_at--1000--4971Chr02:29832088..29832112 (25 bp)
GCATCGTTTGTAATCTGCTGCTGCT
LOC_Os02g48740
Target Sequence 
ATGGCTTCGGATGCAGCTTCTGATATTGCTTCGGAGGACGCTGCTTCAATAACAGCTGCATCTGAGGGAGAAGAGGTGAA
TTCGCTATCTGATAGTATGTCCAATTTGACCACATATGATGCTATTTCAAATGCCCCGCCAGCAGAAAATGGAAATGGTG
TGGCAGGATGATGATGATTACACGGGCTGTTCTTCTGTCCTGATAGCGGTTTTATTATGGTGGAACTAGTACCGTCATGG
TGTCCAACGTTTGCTGCCAGAAGTGATTTTTTTCCTGCTTCTGTTCCAAGCCTACTTTTGAGGTAGCATGATAGATACAG
ATACAGATAGATAGAGTTGCCGTTTGTTCATTTAATTTTGCTCTATACATACGACAGGGAAAAAACTATACATAGGTCAC
TAGTTGGGCATTTCTTGTACTCTTAGTATACTTTGATTTCAATGTCTTCACTTTGTTTCCCGGACCTGTCAAAATGTACT
GGCATCGTTTGTAATCTGCTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis