Browse Element(s) Details

Os.23086.1.S1_x_at

Description

gb:AK060873.1
DB_XREF= gi:32970891
TID=Os.23086.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H12, full insert sequence.
FL= gb:AK060873.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21340	11/11	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os02g48730	1/11	RHO protein GDP dissociation inhibitor containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21270	Os.49289.1.S1_x_at	11/11	6	+	12297047..12297983	Glycine rich protein family protein, expressed
LOC_Os06g21270	Os.49289.1.S1_at	11/11	6	+	12297047..12297983	Glycine rich protein family protein, expressed
LOC_Os06g21280	Os.26886.1.S1_x_at	9/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21280	Os.26886.3.S1_x_at	5/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21280	OsAffx.16244.1.S1_x_at	1/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21290	NA	NA	6	+	12306265..12306810	hypothetical protein
LOC_Os06g21300	OsAffx.16467.1.S1_at	6/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21300	Os.26886.2.S1_s_at	6/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21300	Os.26886.6.S1_s_at	4/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21310	OsAffx.15535.1.S1_at	10/11	6	+	12311355..12312371	Glycine rich protein family protein
LOC_Os06g21320	OsAffx.27749.1.S1_at	11/11	6	+	12313292..12313507	hypothetical protein
LOC_Os06g21330	Os.54837.1.S1_at	11/11	6	+	12317392..12320914	ankyrin repeat family protein, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_x_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_x_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21350	OsAffx.27750.1.S1_x_at	4/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.36607.2.S1_x_at	3/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.46853.2.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21360	NA	NA	6	+	12332263..12336284	Sodium/hydrogen exchanger family protein
LOC_Os06g21369	Os.4620.1.S1_at	11/11	6	+	12337888..12340181	hypothetical protein
LOC_Os06g21380	Os.11946.1.S1_at	11/11	6	+	12344921..12349134	carboxyl-terminal protease family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005737	cellular_component	cytoplasm
GO:0005094	molecular_function	Rho GDP-dissociation inhibitor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.23086.1.S1_x_at--151--649	1	Chr06:12322364..12322388 (25 bp)	GATACCGTGATACACCTCTGAGAAA	LOC_Os06g21340
Os.23086.1.S1_x_at--1161--263	1	Chr06:12322340..12322364 (25 bp)	AACCAGAATGTCGATCACTGCTTCC	LOC_Os06g21340
Os.23086.1.S1_x_at--763--283	1	Chr06:12322295..12322319 (25 bp)	AAGTTTCGATTTCGCTCCATCACCA	LOC_Os06g21340
Os.23086.1.S1_x_at--523--479	1	Chr06:12322282..12322306 (25 bp)	GCTCCATCACCAGTTCGTCGATGAT	LOC_Os06g21340
Os.23086.1.S1_x_at--517--893	1	Chr06:12322258..12322282 (25 bp)	TGACCGGAAGTGCTACCTGGAGATC	LOC_Os06g21340
Os.23086.1.S1_x_at--509--855	2	Chr02:29824089..29824113 (25 bp)	TGGAGATCAACTACACCTTCGACAT	LOC_Os02g48730
Os.23086.1.S1_x_at--309--847	1	Chr06:12322206..12322230 (25 bp)	TGGCCCTGCAAGTCCTGAGAAGCTG	LOC_Os06g21340
Os.23086.1.S1_x_at--984--693	1	Chr06:12322054..12322078 (25 bp)	GTAGATTCATTTGTCAGGTCAGCAT	LOC_Os06g21340
Os.23086.1.S1_x_at--1131--1079	1	Chr06:12322030..12322054 (25 bp)	TTGTTAATCTGTGCCTGTCGCTCGA	LOC_Os06g21340
Os.23086.1.S1_x_at--894--871	1	Chr06:12322015..12322039 (25 bp)	TGTCGCTCGAGCTCAGTTGTAAACT	LOC_Os06g21340
Os.23086.1.S1_x_at--952--1033	1	Chr06:12321967..12321991 (25 bp)	TTGTACTACTAGCTCCGTTTTCAAG	LOC_Os06g21340

Target Sequence

GATACCGTGATACACCTCTGAGAAAACCAGAATGTCGATCACTGCTTCCCGCGCCCACTGAACTGAATCAAGTTTCGATT
TCGCTCCATCACCAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTG
GCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCC
TGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCAT
TTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTG
TACTACTAGCTCCGTTTTCAAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis