Browse Element(s) Details

OsAffx.27749.1.S1_at

Description

tigr:9634.m02086
TID=OsAffx.27749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21320	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21260	OsAffx.25574.2.S1_x_at	1/11	6	+	12291025..12295851	retrotransposon protein, putative, unclassified
LOC_Os06g21260	Os.27255.2.S1_x_at	1/11	6	+	12291025..12295851	retrotransposon protein, putative, unclassified
LOC_Os06g21270	Os.49289.1.S1_x_at	11/11	6	+	12297047..12297983	Glycine rich protein family protein, expressed
LOC_Os06g21270	Os.49289.1.S1_at	11/11	6	+	12297047..12297983	Glycine rich protein family protein, expressed
LOC_Os06g21280	Os.26886.1.S1_x_at	9/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21280	Os.26886.3.S1_x_at	5/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21280	OsAffx.16244.1.S1_x_at	1/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21290	NA	NA	6	+	12306265..12306810	hypothetical protein
LOC_Os06g21300	OsAffx.16467.1.S1_at	6/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21300	Os.26886.2.S1_s_at	6/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21300	Os.26886.6.S1_s_at	4/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21310	OsAffx.15535.1.S1_at	10/11	6	+	12311355..12312371	Glycine rich protein family protein
LOC_Os06g21320	OsAffx.27749.1.S1_at	11/11	6	+	12313292..12313507	hypothetical protein
LOC_Os06g21330	Os.54837.1.S1_at	11/11	6	+	12317392..12320914	ankyrin repeat family protein, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_x_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_x_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21350	OsAffx.27750.1.S1_x_at	4/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.36607.2.S1_x_at	3/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.46853.2.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21360	NA	NA	6	+	12332263..12336284	Sodium/hydrogen exchanger family protein
LOC_Os06g21369	Os.4620.1.S1_at	11/11	6	+	12337888..12340181	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27749.1.S1_at--290--575	1	Chr06:12313435..12313459 (25 bp)	GACGGCAGAGTCAGCGAGCTCCGAG	LOC_Os06g21320
OsAffx.27749.1.S1_at--95--339	2	Chr06:12313424..12313448 (25 bp)	CAGCGAGCTCCGAGGGCGGTGCGGT	LOC_Os06g21320
OsAffx.27749.1.S1_at--1139--913	1	Chr06:12313405..12313429 (25 bp)	TGCGGTGTGCAAGCTCGACGGAACC	LOC_Os06g21320
OsAffx.27749.1.S1_at--73--747	1	Chr06:12313401..12313425 (25 bp)	GTGTGCAAGCTCGACGGAACCGGCT	LOC_Os06g21320
OsAffx.27749.1.S1_at--758--269	1	Chr06:12313395..12313419 (25 bp)	AAGCTCGACGGAACCGGCTGACGAG	LOC_Os06g21320
OsAffx.27749.1.S1_at--926--605	1	Chr06:12313373..12313397 (25 bp)	GAGTTCCCGGGCTCGTCCAGGCGAA	LOC_Os06g21320
OsAffx.27749.1.S1_at--425--481	1	Chr06:12313363..12313387 (25 bp)	GCTCGTCCAGGCGAACTCGAGGTGT	LOC_Os06g21320
OsAffx.27749.1.S1_at--65--727	1	Chr06:12313359..12313383 (25 bp)	GTCCAGGCGAACTCGAGGTGTGGCT	LOC_Os06g21320
OsAffx.27749.1.S1_at--635--105	1	Chr06:12313344..12313368 (25 bp)	AGGTGTGGCTGGTTTTCAGGCTCAA	LOC_Os06g21320
OsAffx.27749.1.S1_at--641--753	1	Chr06:12313340..12313364 (25 bp)	GTGGCTGGTTTTCAGGCTCAAGAAT	LOC_Os06g21320
OsAffx.27749.1.S1_at--905--833	1	Chr06:12313338..12313362 (25 bp)	GGCTGGTTTTCAGGCTCAAGAATGG	LOC_Os06g21320

Target Sequence

GACGGCAGAGTCAGCGAGCTCCGAGGGCGGTGCGGTGTGCAAGCTCGACGGAACCGGCTGACGAGTTCCCGGGCTCGTCC
AGGCGAACTCGAGGTGTGGCTGGTTTTCAGGCTCAAGAATGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis