Browse Element(s) Details

OsAffx.15535.1.S1_at

Description

tigr:9634.m02085
TID=OsAffx.15535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21310	10/11	Glycine rich protein family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21250	OsAffx.27747.1.S1_at	11/11	6	+	12286613..12287832	Glycine rich protein family protein, expressed
LOC_Os06g21260	OsAffx.25574.2.S1_x_at	1/11	6	+	12291025..12295851	retrotransposon protein, putative, unclassified
LOC_Os06g21260	Os.27255.2.S1_x_at	1/11	6	+	12291025..12295851	retrotransposon protein, putative, unclassified
LOC_Os06g21270	Os.49289.1.S1_x_at	11/11	6	+	12297047..12297983	Glycine rich protein family protein, expressed
LOC_Os06g21270	Os.49289.1.S1_at	11/11	6	+	12297047..12297983	Glycine rich protein family protein, expressed
LOC_Os06g21280	Os.26886.1.S1_x_at	9/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21280	Os.26886.3.S1_x_at	5/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21280	OsAffx.16244.1.S1_x_at	1/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21290	NA	NA	6	+	12306265..12306810	hypothetical protein
LOC_Os06g21300	OsAffx.16467.1.S1_at	6/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21300	Os.26886.2.S1_s_at	6/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21300	Os.26886.6.S1_s_at	4/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21310	OsAffx.15535.1.S1_at	10/11	6	+	12311355..12312371	Glycine rich protein family protein
LOC_Os06g21320	OsAffx.27749.1.S1_at	11/11	6	+	12313292..12313507	hypothetical protein
LOC_Os06g21330	Os.54837.1.S1_at	11/11	6	+	12317392..12320914	ankyrin repeat family protein, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_x_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_x_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21350	OsAffx.27750.1.S1_x_at	4/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.36607.2.S1_x_at	3/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.46853.2.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21360	NA	NA	6	+	12332263..12336284	Sodium/hydrogen exchanger family protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005739	cellular_component	mitochondrion
GO:0003723	molecular_function	RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15535.1.S1_at--959--859	1	Chr06:12311386..12311410 (25 bp)	TGGTCTCCCTGCTTCTTGTCTCTCA	LOC_Os06g21310
OsAffx.15535.1.S1_at--829--907	1	Chr06:12311395..12311419 (25 bp)	TGCTTCTTGTCTCTCAGGATGCAGC	LOC_Os06g21310
OsAffx.15535.1.S1_at--615--1081	1	Chr06:12311401..12311425 (25 bp)	TTGTCTCTCAGGATGCAGCTGCTGC	LOC_Os06g21310
OsAffx.15535.1.S1_at--1135--903	1	Chr06:12311414..12311438 (25 bp)	TGCAGCTGCTGCCAGAGATCAGTTT	LOC_Os06g21310
OsAffx.15535.1.S1_at--1060--159	1	Chr06:12311417..12311441 (25 bp)	AGCTGCTGCCAGAGATCAGTTTATC	LOC_Os06g21310
OsAffx.15535.1.S1_at--306--561	1	NONE	GACAATGAGGTCCAGTTAAAGAACA	NONE
OsAffx.15535.1.S1_at--180--471	1	Chr06:12312085..12312109 (25 bp)	GCTGGCTTCACGGATGAGAAATTGG	LOC_Os06g21310
OsAffx.15535.1.S1_at--991--333	1	Chr06:12312093..12312117 (25 bp)	CACGGATGAGAAATTGGGATATGGC	LOC_Os06g21310
OsAffx.15535.1.S1_at--219--1043	1	Chr06:12312126..12312278 (25 bp)	TTATGGTGGTGCACGGTATGCTGGC	LOC_Os06g21310
OsAffx.15535.1.S1_at--397--903	1	Chr06:12312263..12312287 (25 bp)	TGCACGGTATGCTGGCGGATATGGT	LOC_Os06g21310
OsAffx.15535.1.S1_at--839--395	1	Chr06:12312278..12312302 (25 bp)	CGGATATGGTGTAGGTGCTGGCTAT	LOC_Os06g21310

Target Sequence

TGGTCTCCCTGCTTCTTGTCTCTCAGGATGCAGCTGCTGCCAGAGATCAGTTTATCAATGACAATGAGGTCCAGTTAAAG
AACATGAAGTATGAAAATGGGGCTGGCTTCACGGATGAGAAATTGGGATATGGCGGCGGTGGTTATGGTGGTGCACGGTA
TGCTGGCGGATATGGTGTAGGTGCTGGCTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis