Browse Element(s) Details


Os.27255.2.S1_x_at

Description gb:AK121147.1
DB_XREF= gi:37990770
TID=Os.27255.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078D21, full insert sequence.
FL= gb:AK121147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5039011/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g212601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50360Os.14409.1.S1_at11/116+30479740..30484252pseudouridine synthase family protein, putative, expressed
LOC_Os06g50360Os.7395.1.S1_s_at1/116+30479740..30484252pseudouridine synthase family protein, putative, expressed
LOC_Os06g50370Os.21040.1.S1_at11/116+30491807..30495151RING-H2 finger protein ATL5P, putative, expressed
LOC_Os06g50380Os.8512.1.S1_at11/116+30495475..30500197protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50380Os.4654.1.S1_at1/116+30495475..30500197protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50390Os.27255.2.S1_x_at11/116+30508420..30511305Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g50400Os.22908.1.S1_at11/116+30519197..30520347Alpha-expansin 11 precursor, putative, expressed
LOC_Os06g50410NANA6+30520810..30522036hypothetical protein
LOC_Os06g50420OsAffx.16008.1.S1_at11/116+30527098..30527733Plastocyanin-like domain containing protein
LOC_Os06g50430OsAffx.16009.1.S1_at11/116+30528301..30529521hypothetical protein
LOC_Os06g50440OsAffx.16010.1.S1_at11/116+30536134..30537527hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27255.2.S1_x_at--1060--511Chr06:30510516..30510622 (25 bp)
ATCGACATCATTGGCCAGAACTTCA
LOC_Os06g50390
Os.27255.2.S1_x_at--446--3411Chr06:30510614..30510637 (24 bp)
CAGAACTTCATGACCGGGCTCAAGG
LOC_Os06g50390
Os.27255.2.S1_x_at--697--1031Chr06:30510635..30510659 (25 bp)
AGGTCGTCTTCAACCGTGAGAAATC
LOC_Os06g50390
Os.27255.2.S1_x_at--334--8911Chr06:30510651..30510675 (25 bp)
TGAGAAATCCGTCCTGGGCTGGCAA
LOC_Os06g50390
Os.27255.2.S1_x_at--889--7191Chr06:30510661..30510685 (25 bp)
GTCCTGGGCTGGCAAAAGTTCGACT
LOC_Os06g50390
Os.27255.2.S1_x_at--736--4772Chr06:30511036..30511060 (25 bp)
GCTGCTGCAGCTGTTTTCTGATGAT
LOC_Os06g50390
Os.27255.2.S1_x_at--541--1051Chr06:30511085..30511109 (25 bp)
AGGTGATTTCATTCGTGGTGGCTGC
LOC_Os06g50390
Os.27255.2.S1_x_at--946--7531Chr06:30511102..30511126 (25 bp)
GTGGCTGCTCTGCTGTGTACATAAC
LOC_Os06g50390
Os.27255.2.S1_x_at--838--6391Chr06:30511171..30511195 (25 bp)
GATCGATCGATCATTGTAGGATTTA
LOC_Os06g50390
Os.27255.2.S1_x_at--147--7932Chr06:30511240..30511264 (25 bp)
GGATTTTCGTTGTTGGATTCGGTGA
LOC_Os06g50390
Os.27255.2.S1_x_at--108--1651Chr06:30511267..30511291 (25 bp)
AGCGAGCTACGTTCATTTATTATAC
LOC_Os06g50390
Target Sequence 
ATCGACATCATTGGCCAGAACTTCATGACCGGGCTCAAGGTCGTCTTCAACCGTGAGAAATCCGTCCTGGGCTGGCAAAA
GTTCGACTGTTACAAGGACGAGAAGATGNCAGACGACGGGTCGAGCGTCGGGAGCCCGAGCCCATCGCCGGGGCCGACCA
CTCACGTNTTCCCGCAGCCGCAGGAGAGCGACTCGCCGGCGGGCAGAACGCCCATCCCCGGCGCGGCGCCGGTGCCGCGG
TCGAGCAGCGCGGCAGCTGGCGGCCGTGCAGGCTTCCGGCTCCTGTCGTCCATGGCGCTCTTGCTGCTGGCTGCTGCTGC
TGCAGCTGTTTTCTGATGATTTTTTTTTTNACTTGGGGAGTTTATAGGTGATTTCATTCGTGGTGGCTGCTCTGCTGTGT
ACATAACNCATGCATGCATTCGAGATGATTTTTATTCAGAAAGCGTAGATAGATCGATCGATCATTGTAGGATTTAGTAA
TTTGTTCTTGTGATGATGATTGATGTGTATATGGTTACGAGGATTTTCGTTGTTGGATTCGGTGATAAGCGAGCTACGTT
CATTTATTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27255.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis