Browse Element(s) Details

Os.14409.1.S1_at

Description

gb:AK072887.1
DB_XREF= gi:32982910
TID=Os.14409.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148F05, full insert sequence.
FL= gb:AK072887.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50360	11/11	pseudouridine synthase family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50310	Os.5399.1.S1_at	10/11	6	+	30451452..30455216	bZIP transcription factor family protein, expressed
LOC_Os06g50310	OsAffx.15280.1.S1_at	1/11	6	+	30451452..30455216	bZIP transcription factor family protein, expressed
LOC_Os06g50320	Os.35344.18.S1_x_at	11/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50320	Os.35344.3.S1_x_at	9/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50320	OsAffx.22940.5.S1_x_at	3/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50330	Os.9199.1.S1_at	10/11	6	+	30463968..30467089	senescence/dehydration-associated protein, putative, expressed
LOC_Os06g50340	Os.275.1.S1_at	11/11	6	+	30469084..30473475	Leucine Rich Repeat family protein, expressed
LOC_Os06g50350	Os.46909.1.S1_at	11/11	6	+	30478368..30479800	expressed protein
LOC_Os06g50360	Os.14409.1.S1_at	11/11	6	+	30479740..30484252	pseudouridine synthase family protein, putative, expressed
LOC_Os06g50360	Os.7395.1.S1_s_at	1/11	6	+	30479740..30484252	pseudouridine synthase family protein, putative, expressed
LOC_Os06g50370	Os.21040.1.S1_at	11/11	6	+	30491807..30495151	RING-H2 finger protein ATL5P, putative, expressed
LOC_Os06g50380	Os.8512.1.S1_at	11/11	6	+	30495475..30500197	protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50380	Os.4654.1.S1_at	1/11	6	+	30495475..30500197	protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50390	Os.27255.2.S1_x_at	11/11	6	+	30508420..30511305	Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0004730	molecular_function	pseudouridylate synthase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14409.1.S1_at--298--1037	1	Chr06:30480305..30480329 (25 bp)	TTTTTATCTGACTTCTGCACTCTGA	LOC_Os06g50360
Os.14409.1.S1_at--814--983	1	Chr06:30480240..30480264 (25 bp)	TAAAGCTAGCTTCCCTTGTTTCATA	LOC_Os06g50360
Os.14409.1.S1_at--1029--23	1	Chr06:30480163..30480187 (25 bp)	ATATCTTCAACGAGTGACCAGGACT	LOC_Os06g50360
Os.14409.1.S1_at--894--583	1	Chr06:30480148..30480172 (25 bp)	GACCAGGACTACACCAAGATGATGA	LOC_Os06g50360
Os.14409.1.S1_at--1099--591	1	Chr06:30480058..30480082 (25 bp)	GAGCTTTAGCACTCGGTGTACACCT	LOC_Os06g50360
Os.14409.1.S1_at--571--283	1	Chr06:30480006..30480030 (25 bp)	AAGTATTCTAGCACAGTTCGCTCTG	LOC_Os06g50360
Os.14409.1.S1_at--298--439	1	Chr06:30479956..30479980 (25 bp)	GCCAAAACAAATCTGCTGTGCGGAA	LOC_Os06g50360
Os.14409.1.S1_at--409--819	1	Chr06:30479931..30479955 (25 bp)	GGAAGAATGTTATCTGCCCTTTTGC	LOC_Os06g50360
Os.14409.1.S1_at--200--313	1	Chr06:30479877..30479901 (25 bp)	AATTTCCTACTTGACTGAACGGCCA	LOC_Os06g50360
Os.14409.1.S1_at--627--41	1	Chr06:30479851..30479875 (25 bp)	ATCAGGCCGTAAGTCTGTAACTCAG	LOC_Os06g50360
Os.14409.1.S1_at--13--255	1	Chr06:30479833..30479857 (25 bp)	AACTCAGGCCTGTGTTGGTCGCTGG	LOC_Os06g50360

Target Sequence

TTTTTATCTGACTTCTGCACTCTGATCAAGGGGCAAGACTGCAGATACAGAATTGGAACTGATTATAAAGCTAGCTTCCC
TTGTTTCATACTCCGAAGGGAGGGGCCAAAATGTNCTTAATCAGTAGGTCCTNGTGCTNTCCATATCTTCAACGAGTGAC
CAGGACTACACCAAGATGATGAACAAGTTAAACTTAACAAGGAAGATGCTTTGAGGATTTTTTTNNNTTCTTTTACAAGA
CCAAGAAACAGAGCTTTAGCACTCGGTGTACACCTGATGTAGGAAAAGAATGTGATTCCTAAAAGTATTCTAGCACAGTT
CGCTCTGTTGAATGTACAGATAACTAAAAAACGCCAAAACAAATCTGCTGTGCGGAAGGAAGAATGTTATCTGCCCTTTT
GCTTTNTTTAAACCTTACCTTTATATACTATAATTTCCTACTTGACTGAACGGCCAAATCAGGCCGTAAGTCTGTAACTC
AGGCCTGTGTTGGTCGCTGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis