Browse Element(s) Details

Os.275.1.S1_at

Description

gb:AK111824.1
DB_XREF= gi:37988487
TID=Os.275.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050A06, full insert sequence.
FL= gb:AK111824.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50340	11/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50300	Os.12393.1.S1_at	11/11	6	+	30443413..30449445	Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50300	Os.12393.1.S2_a_at	11/11	6	+	30443413..30449445	Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50310	Os.5399.1.S1_at	10/11	6	+	30451452..30455216	bZIP transcription factor family protein, expressed
LOC_Os06g50310	OsAffx.15280.1.S1_at	1/11	6	+	30451452..30455216	bZIP transcription factor family protein, expressed
LOC_Os06g50320	Os.35344.18.S1_x_at	11/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50320	Os.35344.3.S1_x_at	9/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50320	OsAffx.22940.5.S1_x_at	3/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50330	Os.9199.1.S1_at	10/11	6	+	30463968..30467089	senescence/dehydration-associated protein, putative, expressed
LOC_Os06g50340	Os.275.1.S1_at	11/11	6	+	30469084..30473475	Leucine Rich Repeat family protein, expressed
LOC_Os06g50350	Os.46909.1.S1_at	11/11	6	+	30478368..30479800	expressed protein
LOC_Os06g50360	Os.14409.1.S1_at	11/11	6	+	30479740..30484252	pseudouridine synthase family protein, putative, expressed
LOC_Os06g50360	Os.7395.1.S1_s_at	1/11	6	+	30479740..30484252	pseudouridine synthase family protein, putative, expressed
LOC_Os06g50370	Os.21040.1.S1_at	11/11	6	+	30491807..30495151	RING-H2 finger protein ATL5P, putative, expressed
LOC_Os06g50380	Os.8512.1.S1_at	11/11	6	+	30495475..30500197	protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50380	Os.4654.1.S1_at	1/11	6	+	30495475..30500197	protein phosphatase 2C homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172	biological_process	signal complex formation
GO:0009934	biological_process	regulation of meristem organization
GO:0030154	biological_process	cell differentiation
GO:0016020	cellular_component	membrane
GO:0016021	cellular_component	integral to membrane
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004702	molecular_function	receptor signaling protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.275.1.S1_at--304--357	1	Chr06:30469611..30469635 (25 bp)	CATACACGCTGCGAGTGGACGAGAA	LOC_Os06g50340
Os.275.1.S1_at--1023--897	1	Chr06:30469389..30469413 (25 bp)	TGAACCTGTACAAGGTGGCCATGGC	LOC_Os06g50340
Os.275.1.S1_at--161--463	1	Chr06:30469326..30469350 (25 bp)	GCGAGGTCGTCCACATGCTCTCCAA	LOC_Os06g50340
Os.275.1.S1_at--156--235	1	Chr06:30469298..30469322 (25 bp)	AAACTCGGCCCAGCCCAATAGTGGT	LOC_Os06g50340
Os.275.1.S1_at--1144--165	1	Chr06:30469287..30469311 (25 bp)	AGCCCAATAGTGGTGACCTCCTCGT	LOC_Os06g50340
Os.275.1.S1_at--763--877	1	Chr06:30469233..30469257 (25 bp)	TGTTTGCTGTTAATGTGTGCGCTTA	LOC_Os06g50340
Os.275.1.S1_at--128--747	1	Chr06:30469219..30469243 (25 bp)	GTGTGCGCTTAATTAGCGGCTAATT	LOC_Os06g50340
Os.275.1.S1_at--841--489	1	Chr06:30469187..30469211 (25 bp)	GCTTAGCTGGTACTTTTGCCGCGTG	LOC_Os06g50340
Os.275.1.S1_at--59--453	1	Chr06:30469170..30469194 (25 bp)	GCCGCGTGTGGTTGACGTGTACAAT	LOC_Os06g50340
Os.275.1.S1_at--713--893	1	Chr06:30469158..30469182 (25 bp)	TGACGTGTACAATAACAGGCGGATT	LOC_Os06g50340
Os.275.1.S1_at--755--197	1	Chr06:30469130..30469154 (25 bp)	ACTGCTTTTCTGCTATGCGTAATAG	LOC_Os06g50340

Target Sequence

CATACACGCTGCGAGTGGACGAGAAGAGCGACGTGTATAGCTTCGGTGTGGTGCTATTGGAGCTCATCACCGGACGCCGC
CCCGTGGGCGGGTTCGGTGACGGCGTGGACATCGTGCACNTGGGTCCGCAAGGTGACCGCCGAGCTGCCGGACAACTCCG
ACACNGCGGCCGTCCTCGCCGTGGCCGACCGCCGCCTGACGCCGGAGCCGGTGGCGCTGATGGTGAACCTGTACAAGGTG
GCCATGGCGTGCGTGGAGGAGGCGAGCACGGCCCGGCCCACCATGCGCGAGGTCGTCCACATGCTCTCCAACCCAAACTC
GGCCCAGCCCAATAGTGGTGACCTCCTCGTCACCTTCTGAACCCCAAACTTAACGGTATTGTTTGCTGTTAATGTGTGCG
CTTAATTAGCGGCTAATTAATTTTGGCTTAGCTGGTACTTTTGCCGCGTGTGGTTGACGTGTACAATAACAGGCGGATTA
CNACTGCTTTTCTGCTATGCGTAATAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis