Browse Element(s) Details

Os.5399.1.S1_at

Description

gb:AK071639.1
DB_XREF= gi:32981662
TID=Os.5399.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.5399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099K10, full insert sequence.
FL= gb:AK071639.1 gb:AK103968.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50310	10/11	bZIP transcription factor family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50260	OsAffx.21897.5.S1_x_at	6/11	6	+	30423968..30426909	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50270	NA	NA	6	+	30427226..30433336	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50280	OsAffx.28198.1.S1_at	11/11	6	+	30433756..30436762	F-box domain containing protein
LOC_Os06g50290	NA	NA	6	+	30438406..30442234	transposon protein, putative, Pong sub-class
LOC_Os06g50300	Os.12393.1.S1_at	11/11	6	+	30443413..30449445	Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50300	Os.12393.1.S2_a_at	11/11	6	+	30443413..30449445	Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50310	Os.5399.1.S1_at	10/11	6	+	30451452..30455216	bZIP transcription factor family protein, expressed
LOC_Os06g50310	OsAffx.15280.1.S1_at	1/11	6	+	30451452..30455216	bZIP transcription factor family protein, expressed
LOC_Os06g50320	Os.35344.18.S1_x_at	11/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50320	Os.35344.3.S1_x_at	9/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50320	OsAffx.22940.5.S1_x_at	3/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50330	Os.9199.1.S1_at	10/11	6	+	30463968..30467089	senescence/dehydration-associated protein, putative, expressed
LOC_Os06g50340	Os.275.1.S1_at	11/11	6	+	30469084..30473475	Leucine Rich Repeat family protein, expressed
LOC_Os06g50350	Os.46909.1.S1_at	11/11	6	+	30478368..30479800	expressed protein
LOC_Os06g50360	Os.14409.1.S1_at	11/11	6	+	30479740..30484252	pseudouridine synthase family protein, putative, expressed
LOC_Os06g50360	Os.7395.1.S1_s_at	1/11	6	+	30479740..30484252	pseudouridine synthase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5399.1.S1_at--128--727	1	Chr06:30454067..30454091 (25 bp)	GTCCAGGGATGCAGGTGAGAACAAT	LOC_Os06g50310
Os.5399.1.S1_at--234--245	1	Chr06:30453964..30453988 (25 bp)	AAAATCTGGATCTGCAAAGCTCCCA	LOC_Os06g50310
Os.5399.1.S1_at--475--47	1	Chr06:30453955..30453979 (25 bp)	ATCTGCAAAGCTCCCAGTCTGTGGG	LOC_Os06g50310
Os.5399.1.S1_at--241--487	1	Chr06:30453930..30453954 (25 bp)	GCTATGGGTACGATGCCTGTCGGCT	LOC_Os06g50310
Os.5399.1.S1_at--558--699	1	Chr06:30453923..30453947 (25 bp)	GTACGATGCCTGTCGGCTGTATGCC	LOC_Os06g50310
Os.5399.1.S1_at--804--141	1	NONE	AGAAATGAAGGATCCCCATCGCCAA	NONE
Os.5399.1.S1_at--1122--637	1	Chr06:30451832..30451856 (25 bp)	GATCCCCATCGCCAAGACTTCAAGT	LOC_Os06g50310
Os.5399.1.S1_at--676--51	1	Chr06:30451790..30451814 (25 bp)	ATCGCATAAATTGCTAGCGTCTATC	LOC_Os06g50310
Os.5399.1.S1_at--905--485	1	Chr06:30451778..30451802 (25 bp)	GCTAGCGTCTATCTCTAGGAATGTG	LOC_Os06g50310
Os.5399.1.S1_at--113--11	1	Chr06:30451749..30451773 (25 bp)	ATTCTGTCGCCGATGATGCTTCCAC	LOC_Os06g50310
Os.5399.1.S1_at--178--341	1	Chr06:30451571..30451595 (25 bp)	CAGCATCATTGTTTTATGCCAGGAT	LOC_Os06g50310

Target Sequence

GTCCAGGGATGCAGGTGAGAACAATGGGCGAGGATGGCGCTGTGAGTGGTCAGGTGTTGGGGCAAGGTGCCTGTGATATT
GCCAGTATCCAATGCCAAGGTGCAAAATCTGGATCTGCAAAGCTCCCAGTCTGTGGGGCTATGGGTACGATGCCTGTCGG
CTGTATGCCAAATTCTGAAAAGAAATGAAGGATCCCCATCGCCAAGACTTCAAGTCAGGGCATTCAAGAAACATCGCATA
AATTGCTAGCGTCTATCTCTAGGAATGTGTGTNATTCTGTCGCCGATGATGCTTCCACAGTGCCTGAGGCGATTTAAGTT
CGTTAGCTATGAAGCTATCAGTATGTCCTCTAGTTTGCTTAGCTTTCCCTCCGTTTTTTTCTTGATGTTGGAAATGGACA
ATATTGCTGCTAGTGACTCCCAAATGCTCNCTGATAAAAAACTTAAAGATTCAGCATCATTGTTTTATGCCAGGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis