Browse Element(s) Details


Os.46909.1.S1_at

Description gb:AK110637.1
DB_XREF= gi:32995846
TID=Os.46909.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-C05, full insert sequence.
FL= gb:AK110637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5035011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50310Os.5399.1.S1_at10/116+30451452..30455216bZIP transcription factor family protein, expressed
LOC_Os06g50310OsAffx.15280.1.S1_at1/116+30451452..30455216bZIP transcription factor family protein, expressed
LOC_Os06g50320Os.35344.18.S1_x_at11/116+30456263..30462310transposon protein, putative, Mutator sub-class
LOC_Os06g50320Os.35344.3.S1_x_at9/116+30456263..30462310transposon protein, putative, Mutator sub-class
LOC_Os06g50320OsAffx.22940.5.S1_x_at3/116+30456263..30462310transposon protein, putative, Mutator sub-class
LOC_Os06g50330Os.9199.1.S1_at10/116+30463968..30467089senescence/dehydration-associated protein, putative, expressed
LOC_Os06g50340Os.275.1.S1_at11/116+30469084..30473475Leucine Rich Repeat family protein, expressed
LOC_Os06g50350Os.46909.1.S1_at11/116+30478368..30479800expressed protein
LOC_Os06g50360Os.14409.1.S1_at11/116+30479740..30484252pseudouridine synthase family protein, putative, expressed
LOC_Os06g50360Os.7395.1.S1_s_at1/116+30479740..30484252pseudouridine synthase family protein, putative, expressed
LOC_Os06g50370Os.21040.1.S1_at11/116+30491807..30495151RING-H2 finger protein ATL5P, putative, expressed
LOC_Os06g50380Os.8512.1.S1_at11/116+30495475..30500197protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50380Os.4654.1.S1_at1/116+30495475..30500197protein phosphatase 2C homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46909.1.S1_at--982--3991Chr06:30478468..30478896 (25 bp)
CGTCCCGACGATTCAAGGTTCAAGA
LOC_Os06g50350
Os.46909.1.S1_at--891--3831Chr06:30479284..30479308 (25 bp)
CTGCTGCAGCAGGTCTTGATTCAAG
LOC_Os06g50350
Os.46909.1.S1_at--1158--2351Chr06:30479313..30479337 (25 bp)
AAAGCCAGCTTGGTTCTTGGAACAG
LOC_Os06g50350
Os.46909.1.S1_at--524--10271Chr06:30479343..30479367 (25 bp)
TTTGCAATCAGTTCAGAGTCCGGTA
LOC_Os06g50350
Os.46909.1.S1_at--746--5311Chr06:30479417..30479441 (25 bp)
GAAGGGCTACATCACCAAGCATAAT
LOC_Os06g50350
Os.46909.1.S1_at--904--3231Chr06:30479432..30479456 (25 bp)
CAAGCATAATGCTCCCGCTGATGTC
LOC_Os06g50350
Os.46909.1.S1_at--43--971Chr06:30479492..30479516 (25 bp)
AGGAGACGCACCTGCTAAGAACCCA
LOC_Os06g50350
Os.46909.1.S1_at--1083--7392Chr06:30479583..30479607 (25 bp)
GTGATCGTCCTATCGTTGGATTCAT
LOC_Os06g50350
Os.46909.1.S1_at--477--151Chr06:30479629..30479653 (25 bp)
ATTAGCTGCTCGTACAATAGTTTGC
LOC_Os06g50350
Os.46909.1.S1_at--173--5511Chr06:30479663..30479687 (25 bp)
GAACACACTGTATTTCTCCAGCTAG
LOC_Os06g50350
Os.46909.1.S1_at--1044--10591Chr06:30479676..30479700 (25 bp)
TTCTCCAGCTAGATGCAGATCTGCC
LOC_Os06g50350
Target Sequence 
CGTCCCGACGATTCAAGGTTCAAGAGTCGATGGAAGACCAAACAGCTGCTGCAGCAGGTCTTGATTCAAGAGTGAAAGCC
AGCTTGGTTCTTGGAACAGAATCATTTGCAATCAGTTCAGAGTCCGGTATTCTATCGGAGCAGCTGGCTGCTATGAAGGA
GAAGAGCATGGAGATCCTGAAGGGCTACATCACCAAGCATAATGCTCCCGCTGATGTCCCTGATGAACCCATCGAGGGAT
TATCTGATGATGAAGGAGACGCACCTGCTAAGAACCCACCAAAGAAACCTAAGAAGCAGAAGTGATCATCCAATTGTAAT
GGAAAAGGTTGATCTGGAAAAGATGTGATCGTCCTATCGTTGGATTCATGATGCTTAGAATTTGTAAGAAATTAGCTGCT
CGTACAATAGTTTGCTCAAAGGCTGAACACACTGTATTTCTCCAGCTAGATGCAGATCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis