Browse Element(s) Details


Os.21040.1.S1_at

Description gb:AK067113.1
DB_XREF= gi:32977131
TID=Os.21040.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.21040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096G12, full insert sequence.
FL= gb:AK061850.1 gb:AK067113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5037011/11RING-H2 finger protein ATL5P, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50330Os.9199.1.S1_at10/116+30463968..30467089senescence/dehydration-associated protein, putative, expressed
LOC_Os06g50340Os.275.1.S1_at11/116+30469084..30473475Leucine Rich Repeat family protein, expressed
LOC_Os06g50350Os.46909.1.S1_at11/116+30478368..30479800expressed protein
LOC_Os06g50360Os.14409.1.S1_at11/116+30479740..30484252pseudouridine synthase family protein, putative, expressed
LOC_Os06g50360Os.7395.1.S1_s_at1/116+30479740..30484252pseudouridine synthase family protein, putative, expressed
LOC_Os06g50370Os.21040.1.S1_at11/116+30491807..30495151RING-H2 finger protein ATL5P, putative, expressed
LOC_Os06g50380Os.8512.1.S1_at11/116+30495475..30500197protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50380Os.4654.1.S1_at1/116+30495475..30500197protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50390Os.27255.2.S1_x_at11/116+30508420..30511305Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g50400Os.22908.1.S1_at11/116+30519197..30520347Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21040.1.S1_at--1154--1571Chr06:30494332..30494356 (25 bp)
AGCTCCCGGAGGTCAGGATCACTGA
LOC_Os06g50370
Os.21040.1.S1_at--746--31Chr06:30494376..30494400 (25 bp)
ATTGGTGACCTCTCGGGATGTTCAG
LOC_Os06g50370
Os.21040.1.S1_at--1111--6271Chr06:30494392..30494412 (21 bp)
GATGTTCAGTTTGCCTCCAGGATTT
LOC_Os06g50370
Os.21040.1.S1_at--1160--3951Chr06:30494683..30494707 (25 bp)
CGGATTGCTGGCACGTGTTCCATGT
LOC_Os06g50370
Os.21040.1.S1_at--1058--3531Chr06:30494714..30494738 (25 bp)
CATCGACGGCTGGTTGATCAAGCAT
LOC_Os06g50370
Os.21040.1.S1_at--959--3671Chr06:30494841..30494865 (25 bp)
CTTTCTTGCTGTGTGCTGCGATCGA
LOC_Os06g50370
Os.21040.1.S1_at--98--531Chr06:30494861..30494885 (25 bp)
ATCGAGTTGTCCATCAGTGTTGCTG
LOC_Os06g50370
Os.21040.1.S1_at--194--2111Chr06:30494977..30495001 (25 bp)
ACATGCTCTATCTTTTTGGTTGAAC
LOC_Os06g50370
Os.21040.1.S1_at--1114--10191Chr06:30495018..30495042 (25 bp)
TATATTTCTATCTACTCACTCCTTT
LOC_Os06g50370
Os.21040.1.S1_at--493--1991Chr06:30495035..30495059 (25 bp)
ACTCCTTTCTCCTTATGTAACATAC
LOC_Os06g50370
Os.21040.1.S1_at--237--5471Chr06:30495073..30495097 (25 bp)
GAACTGGCTTGTGCTGATCATCTGA
LOC_Os06g50370
Target Sequence 
AGCTCCCGGAGGTCAGGATCACTGAGGAGTACAGGAGGAACGCCATTGGTGACCTCTCGGGATGTTCAGTTTGCCTCCAG
GATTTCCAGACAGGTGAGAAGGTGAGGAGCTTGCCGGATTGCTGGCACGTGTTCCATGTGCCGTGCATCGACGGCTGGTT
GATCAAGCATGGATCCTGCCCGTTGTGCCGGAGGAAGCTGTGAGATCGACGACGACGACGGCCATGGTGATCACTGCTAT
AGTTGTAGCAGAAGGAGGAGGAGGCTGCTCTGCTTTCTTGCTGTGTGCTGCGATCGAGTTGTCCATCAGTGTTGCTGTTC
TTAGAGAAGAAGACTGACATCTCTCTCTCTCTCTATATATATAGAAAACCCTTAATCTATAGAGCATTTTGTTTCTGCTT
ATATTGCTACATGCTCTATCTTTTTGGTTGAACTATCTACATATATATCTATATTTCTATCTACTCACTCCTTTCTCCTT
ATGTAACATACCTCTCAAAACTCTGAACTGGCTTGTGCTGATCATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis