Browse Element(s) Details

Os.9199.1.S1_at

Description

gb:AK071437.1
DB_XREF= gi:32981460
TID=Os.9199.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023095M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095M01, full insert sequence.
FL= gb:AK071437.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50330	10/11	senescence/dehydration-associated protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50290	NA	NA	6	+	30438406..30442234	transposon protein, putative, Pong sub-class
LOC_Os06g50300	Os.12393.1.S1_at	11/11	6	+	30443413..30449445	Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50300	Os.12393.1.S2_a_at	11/11	6	+	30443413..30449445	Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50310	Os.5399.1.S1_at	10/11	6	+	30451452..30455216	bZIP transcription factor family protein, expressed
LOC_Os06g50310	OsAffx.15280.1.S1_at	1/11	6	+	30451452..30455216	bZIP transcription factor family protein, expressed
LOC_Os06g50320	Os.35344.18.S1_x_at	11/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50320	Os.35344.3.S1_x_at	9/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50320	OsAffx.22940.5.S1_x_at	3/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50330	Os.9199.1.S1_at	10/11	6	+	30463968..30467089	senescence/dehydration-associated protein, putative, expressed
LOC_Os06g50340	Os.275.1.S1_at	11/11	6	+	30469084..30473475	Leucine Rich Repeat family protein, expressed
LOC_Os06g50350	Os.46909.1.S1_at	11/11	6	+	30478368..30479800	expressed protein
LOC_Os06g50360	Os.14409.1.S1_at	11/11	6	+	30479740..30484252	pseudouridine synthase family protein, putative, expressed
LOC_Os06g50360	Os.7395.1.S1_s_at	1/11	6	+	30479740..30484252	pseudouridine synthase family protein, putative, expressed
LOC_Os06g50370	Os.21040.1.S1_at	11/11	6	+	30491807..30495151	RING-H2 finger protein ATL5P, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009409	biological_process	response to cold
GO:0009414	biological_process	response to water deprivation
GO:0009644	biological_process	response to high light intensity
GO:0009651	biological_process	response to salt stress

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9199.1.S1_at--933--817	1	Chr06:30464687..30464711 (25 bp)	GGAACGAATGTTCTGTCCACATCAT	LOC_Os06g50330
Os.9199.1.S1_at--588--203	1	Chr06:30464669..30464693 (25 bp)	ACATCATCAACTGTGACTACCGGTC	LOC_Os06g50330
Os.9199.1.S1_at--418--895	1	Chr06:30464656..30464680 (25 bp)	TGACTACCGGTCTTGTATCCCACAA	LOC_Os06g50330
Os.9199.1.S1_at--323--501	1	Chr06:30464389..30464413 (25 bp)	GCAGGCCACGCAATCGGGACAGCAT	LOC_Os06g50330
Os.9199.1.S1_at--541--303	1	Chr06:30464186..30464210 (25 bp)	AATCCATCCCAGCTAGTTTTTGCAG	LOC_Os06g50330
Os.9199.1.S1_at--369--187	1	Chr06:30464135..30464159 (25 bp)	ACGAGTCATGGGTGTGCTGCACTAC	LOC_Os06g50330
Os.9199.1.S1_at--501--511	1	Chr06:30464117..30464141 (25 bp)	GCACTACTGCTACTGTTGCTTGTAA	LOC_Os06g50330
Os.9199.1.S1_at--772--515	1	Chr06:30464070..30464094 (25 bp)	GCAACTCCTGAACGCTGATGATGTA	LOC_Os06g50330
Os.9199.1.S1_at--1046--629	1	Chr06:30464054..30464078 (25 bp)	GATGATGTACTACCACTTTTGTGCT	LOC_Os06g50330
Os.9199.1.S1_at--336--245	1	Chr06:30463995..30464019 (25 bp)	AAAATTTGTTTCTGCGTCCTGAGGT	LOC_Os06g50330
Os.9199.1.S1_at--161--705	1	Chr06:30463967..30463991 (25 bp)	GTAAATCTTTCAGAGCTGTCTGCTA	NONE

Target Sequence

GGAACGAATGTTCTGTCCACATCATCAACTGTGACTACCGGTCTTGTATCCCACAAATATGGNGAGAAAGCNGCGGCTGC
GACCAATGAAGGNATGGATGCAGCAGGCCACGCAATCGGGACAGCATGGGCAGTGTTCAANGATTCGGCAGGCCTTNGAA
CCCGAAGAGCGTCCTNAAAGCCAACCTCACTCGNCCAAGTCTACCNATNCAAANGCAGCAGCTNGCTNGACTATCGTGCA
AANGCAAAAGAAATAGTTCGTCCTCAACGATCAACCCNGTGTTGGAACGNTTCCTGACTAATAGAAGCTCTGCCCCAATC
CATCCCAGCTAGTTTTTGCAGATGTCTTCTCTTGTTTTCTTTTTTTCACGAGTCATGGGTGTGCTGCACTACTGCTACTG
TTGCTTGTAATATATGTGCTGAAAAACCAAAAGCAACTCCTGAACGCTGATGATGTACTACCACTTTTGTGCTGAATGAT
GCAATGTACGGAAATCTGTGGTGTTGCAAAATTTGTTTCTGCGTCCTGAGGTGGAGTAAATCTTTCAGAGCTGTCTGCTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis