Browse Element(s) Details

Os.12393.1.S2_a_at

Description

gb:AK102478.1
DB_XREF= gi:32987687
TID=Os.12393.1
CNT=69
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.12393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for ferredoxin, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094I10, full insert sequence.
FL= gb:AB037681.1 gb:AK062023.1 gb:AK102478.1 gb:AK063385.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50300	11/11	Endoplasmin homolog precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50240	OsAffx.16007.1.S1_at	10/11	6	+	30419080..30420779	Thaumatin protein, putative
LOC_Os06g50250	OsAffx.28197.1.S1_at	11/11	6	+	30421609..30422507	hypothetical protein
LOC_Os06g50260	OsAffx.21897.5.S1_x_at	6/11	6	+	30423968..30426909	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50270	NA	NA	6	+	30427226..30433336	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50280	OsAffx.28198.1.S1_at	11/11	6	+	30433756..30436762	F-box domain containing protein
LOC_Os06g50290	NA	NA	6	+	30438406..30442234	transposon protein, putative, Pong sub-class
LOC_Os06g50300	Os.12393.1.S1_at	11/11	6	+	30443413..30449445	Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50300	Os.12393.1.S2_a_at	11/11	6	+	30443413..30449445	Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50310	Os.5399.1.S1_at	10/11	6	+	30451452..30455216	bZIP transcription factor family protein, expressed
LOC_Os06g50310	OsAffx.15280.1.S1_at	1/11	6	+	30451452..30455216	bZIP transcription factor family protein, expressed
LOC_Os06g50320	Os.35344.18.S1_x_at	11/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50320	Os.35344.3.S1_x_at	9/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50320	OsAffx.22940.5.S1_x_at	3/11	6	+	30456263..30462310	transposon protein, putative, Mutator sub-class
LOC_Os06g50330	Os.9199.1.S1_at	10/11	6	+	30463968..30467089	senescence/dehydration-associated protein, putative, expressed
LOC_Os06g50340	Os.275.1.S1_at	11/11	6	+	30469084..30473475	Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006457	biological_process	protein folding
GO:0009408	biological_process	response to heat
GO:0009934	biological_process	regulation of meristem organization
GO:0010075	biological_process	regulation of meristem size
GO:0046685	biological_process	response to arsenic
GO:0005739	cellular_component	mitochondrion
GO:0005783	cellular_component	endoplasmic reticulum
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12393.1.S2_a_at--106--281	1	Chr06:30444157..30444181 (25 bp)	AAGATCATGCAGTCACAGACCCTCT	LOC_Os06g50300
Os.12393.1.S2_a_at--383--517	1	Chr06:30444123..30444147 (25 bp)	GCAAGCAGGCGTACATGCGCGGCAA	LOC_Os06g50300
Os.12393.1.S2_a_at--1023--613	1	Chr06:30444098..30444122 (25 bp)	GAGGGTACTCGAGATCAACCCCAGG	LOC_Os06g50300
Os.12393.1.S2_a_at--894--93	1	Chr06:30444060..30444084 (25 bp)	AGGAACTCCGTGACAAGGTCGCCCA	LOC_Os06g50300
Os.12393.1.S2_a_at--73--141	1	Chr06:30443882..30443906 (25 bp)	AGACGGCCCTCATGGAGAGCGGCTT	LOC_Os06g50300
Os.12393.1.S2_a_at--732--435	1	Chr06:30443828..30443852 (25 bp)	CCAGCATCTACAGGTCGGTGCAGAA	LOC_Os06g50300
Os.12393.1.S2_a_at--810--145	1	Chr06:30443807..30443831 (25 bp)	AGAAGAGCCTTGACCTGAGCCCCGA	LOC_Os06g50300
Os.12393.1.S2_a_at--592--809	1	Chr06:30443704..30443728 (25 bp)	GGAGCCGTCGTCGTATGATAAGGAC	LOC_Os06g50300
Os.12393.1.S2_a_at--538--161	1	Chr06:30443678..30443702 (25 bp)	AGCTGTAGTGATGTGTCGCCACCAA	LOC_Os06g50300
Os.12393.1.S2_a_at--116--299	1	Chr06:30443612..30443636 (25 bp)	AATGTGATGGTTTCGAGGGACGTCC	LOC_Os06g50300
Os.12393.1.S2_a_at--655--763	1	Chr06:30443596..30443620 (25 bp)	GGGACGTCCATTTTTCCATGCGAAA	LOC_Os06g50300

Target Sequence

AAGATCATGCAGTCACAGACCCTCTCGGATGCCAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCC
CAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGAGCGAGAGCTTGAAGCAGACGGCGAAGC
TGGTGTACCAGACGGCCCTCATGGAGAGCGGCTTCAACCTTCCTGATCCCAAGGACTTCGCCTCCAGCATCTACAGGTCG
GTGCAGAAGAGCCTTGACCTGAGCCCCGACGCGGCCGTGGAAGAGGAAGAGGAGGTCGAGGAGGCCGAGGTTGAAGAGAA
GGAATCATCCAACATCAAGGAGGAGGCGGAGCCGTCGTCGTATGATAAGGACGAGCTGTAGTGATGTGTCGCCACCAACT
GTTGTTTTTTTATCTAGCTCTTNGTGTNAGGTTNTTTAAAAATGTGATGGTTTCGAGGGACGTCCATTTTTCCATGCGAA
A

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis