Browse Element(s) Details


OsAffx.28198.1.S1_at

Description tigr:9634.m04914
TID=OsAffx.28198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5028011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50220Os.15039.1.S1_at11/116+30407670..30413526expressed protein
LOC_Os06g50230Os.4999.1.S1_at11/116+30416663..30417847expressed protein
LOC_Os06g50240OsAffx.16007.1.S1_at10/116+30419080..30420779Thaumatin protein, putative
LOC_Os06g50250OsAffx.28197.1.S1_at11/116+30421609..30422507hypothetical protein
LOC_Os06g50260OsAffx.21897.5.S1_x_at6/116+30423968..30426909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50270NANA6+30427226..30433336retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50280OsAffx.28198.1.S1_at11/116+30433756..30436762F-box domain containing protein
LOC_Os06g50290NANA6+30438406..30442234transposon protein, putative, Pong sub-class
LOC_Os06g50300Os.12393.1.S1_at11/116+30443413..30449445Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50300Os.12393.1.S2_a_at11/116+30443413..30449445Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50310Os.5399.1.S1_at10/116+30451452..30455216bZIP transcription factor family protein, expressed
LOC_Os06g50310OsAffx.15280.1.S1_at1/116+30451452..30455216bZIP transcription factor family protein, expressed
LOC_Os06g50320Os.35344.18.S1_x_at11/116+30456263..30462310transposon protein, putative, Mutator sub-class
LOC_Os06g50320Os.35344.3.S1_x_at9/116+30456263..30462310transposon protein, putative, Mutator sub-class
LOC_Os06g50320OsAffx.22940.5.S1_x_at3/116+30456263..30462310transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28198.1.S1_at--717--9651Chr06:30434554..30434578 (25 bp)
TCAGCATCAACTGTGACCTCAACAA
LOC_Os06g50280
OsAffx.28198.1.S1_at--206--10351Chr06:30434326..30434350 (25 bp)
TTTACCATGCTCAAAAGGCTCGCGC
LOC_Os06g50280
OsAffx.28198.1.S1_at--186--2951Chr06:30434312..30434336 (25 bp)
AAGGCTCGCGCTGCAGTATGTAAAA
LOC_Os06g50280
OsAffx.28198.1.S1_at--611--7951Chr06:30434279..30434303 (25 bp)
GGATCTTCCAGACTTGCTGTCACGA
LOC_Os06g50280
OsAffx.28198.1.S1_at--104--7111Chr06:30434261..30434285 (25 bp)
GTCACGATGTTCTCTTCTTGAGGAC
LOC_Os06g50280
OsAffx.28198.1.S1_at--375--7071Chr06:30434200..30434224 (25 bp)
GTAATACCATGCCAACTTGACAAGC
LOC_Os06g50280
OsAffx.28198.1.S1_at--407--3131Chr06:30434133..30434157 (25 bp)
AATTTCATGTTTCCTGTCTTACGCG
LOC_Os06g50280
OsAffx.28198.1.S1_at--638--8011Chr06:30434093..30434117 (25 bp)
GGAGGCAATCTCAATCATGCTTCAT
LOC_Os06g50280
OsAffx.28198.1.S1_at--398--631Chr06:30434077..30434101 (25 bp)
ATGCTTCATGGTTGCCCAAAATCAG
LOC_Os06g50280
OsAffx.28198.1.S1_at--430--5851Chr06:30434014..30434038 (25 bp)
GACCATGTGTTCACTGTGCTTCCAA
LOC_Os06g50280
OsAffx.28198.1.S1_at--1011--4911Chr06:30433997..30434021 (25 bp)
GCTTCCAAGTGCTTTACCTGTCAAG
LOC_Os06g50280
Target Sequence 
TCAGCATCAACTGTGACCTCAACAAGGATGAATTCAAACATATCGATGGCAAAGCTGTTGTATTAATAGAGGTACATCCA
AATATTTCTGGTTTTACCATGCTCAAAAGGCTCGCGCTGCAGTATGTAAAAATAGTGGGGGATCTTCCAGACTTGCTGTC
ACGATGTTCTCTTCTTGAGGACTTGGATATCAGTGTGTGCACTGGCGTGGGTGATTTGGTAATACCATGCCAACTTGACA
AGCTTCAACATCTGCGGATTTGGGGTACGGAGGTGCAGATGATTGAATTTCATGTTTCCTGTCTTACGCGTTTTGGGTAT
AGAGGGGAGGCAATCTCAATCATGCTTCATGGTTGCCCAAAATCAGTGAAGGCAACAATCGTATTTCTTGAACTTAATCA
ACTTGACCATGTGTTCACTGTGCTTCCAAGTGCTTTACCTGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis