Browse Element(s) Details


Os.15039.1.S1_at

Description gb:AK067426.1
DB_XREF= gi:32977444
TID=Os.15039.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.15039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107M14, full insert sequence.
FL= gb:AK067426.1 gb:AK061844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5022011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50180Os.50494.1.A1_at10/116+30382143..30385892Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os06g50190Os.2235.3.S1_x_at11/116+30386919..30393175retrotransposon protein, putative, unclassified
LOC_Os06g50190Os.52007.1.S1_at1/116+30386919..30393175retrotransposon protein, putative, unclassified
LOC_Os06g50200NANA6+30396269..30399164retrotransposon protein, putative, unclassified, expressed
LOC_Os06g50210OsAffx.5157.1.S1_at11/116+30400328..30402076hypothetical protein
LOC_Os06g50220Os.15039.1.S1_at11/116+30407670..30413526expressed protein
LOC_Os06g50230Os.4999.1.S1_at11/116+30416663..30417847expressed protein
LOC_Os06g50240OsAffx.16007.1.S1_at10/116+30419080..30420779Thaumatin protein, putative
LOC_Os06g50250OsAffx.28197.1.S1_at11/116+30421609..30422507hypothetical protein
LOC_Os06g50260OsAffx.21897.5.S1_x_at6/116+30423968..30426909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50270NANA6+30427226..30433336retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50280OsAffx.28198.1.S1_at11/116+30433756..30436762F-box domain containing protein
LOC_Os06g50290NANA6+30438406..30442234transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15039.1.S1_at--903--5951Chr06:30412963..30412987 (25 bp)
GAGCAAGTCCTCAAAGCACGACCAG
LOC_Os06g50220
Os.15039.1.S1_at--71--9571Chr06:30413011..30413035 (25 bp)
TCTTCAACCTGAATCCAAGCTCAAC
LOC_Os06g50220
Os.15039.1.S1_at--1028--2691Chr06:30413027..30413051 (25 bp)
AAGCTCAACACATCTCCAGTGAACA
LOC_Os06g50220
Os.15039.1.S1_at--799--8711Chr06:30413073..30413097 (25 bp)
TGTCGGAGTCCGAACGCGAGACGCT
LOC_Os06g50220
Os.15039.1.S1_at--1074--5291Chr06:30413170..30413194 (25 bp)
GAAGGCACATCGAACCTGGGATTCA
LOC_Os06g50220
Os.15039.1.S1_at--369--2631Chr06:30413182..30413206 (25 bp)
AACCTGGGATTCATGCCGGAGCCAT
LOC_Os06g50220
Os.15039.1.S1_at--477--5211Chr06:30413225..30413249 (25 bp)
GAATTCGGTAGGAACTCAGCTTCAG
LOC_Os06g50220
Os.15039.1.S1_at--144--4931Chr06:30413251..30413275 (25 bp)
GCTTGACAAGACGATGGACCTGGAT
LOC_Os06g50220
Os.15039.1.S1_at--1057--10211Chr06:30413358..30413382 (25 bp)
TATTCTTTTGGTGTTCCTACGGTTG
LOC_Os06g50220
Os.15039.1.S1_at--770--7471Chr06:30413409..30413433 (25 bp)
GTGTGTGATCTACCTATATATTCTC
LOC_Os06g50220
Os.15039.1.S1_at--598--1211Chr06:30413454..30413478 (25 bp)
AGCTTAGTAGTACAGCCCTGAGTTT
LOC_Os06g50220
Target Sequence 
GAGCAAGTCCTCAAAGCACGACCAGTCCCGATCCCGCAAGGGAATGGATCTTCAACCTGAATCCAAGCTCAACACATCTC
CAGTGAACAACGCCACATATNCGAGCCCGTTGTCGGAGTCCGAACGCGAGACGCTGGACCNCCTGAGCTTCAAGAGGACG
GGCTACGGTAGGAGCAAGAGCTGCGAGCCTCCACCCAATAGAGGGAAGAAGGCACATCGAACCTGGGATTCATGCCGGAG
CCATGGCAGCTCGCCGGCGAGGGAATTCGGTAGGAACTCAGCTTCAGAGCTTGACAAGACGATGGACCTGGATGTAATAG
ATGGGTTAGATAGACTGACTTCTTNACCACCCAACATCCCCCACATTTTGTTAGGTATATGCTGCACAAAAATAGGTATT
CTTTTGGTGTTCCTACGGTTGATTGATCGTATATATATCTTGTAAATGTGTGTGATCTACCTATATATTCTCTTNCATGT
ACATATATACATAGCTTAGTAGTACAGCCCTGAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis