Browse Element(s) Details

Os.50494.1.A1_at

Description

gb:AK121440.1
DB_XREF= gi:37991063
TID=Os.50494.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140L10, full insert sequence.
FL= gb:AK121440.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50180	10/11	Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50120	Os.47383.1.S1_at	10/11	6	+	30356703..30360200	Novel plant SNARE 11, putative, expressed
LOC_Os06g50130	Os.17198.1.S1_at	11/11	6	+	30361752..30362812	expressed protein
LOC_Os06g50140	Os.50481.1.S1_at	11/11	6	+	30363072..30365664	Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g50154	Os.10917.1.S1_at	11/11	6	+	30366404..30373549	Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154	Os.22946.1.S2_at	11/11	6	+	30366404..30373549	Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154	Os.22946.1.S1_at	10/11	6	+	30366404..30373549	Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50170	Os.16975.1.S1_at	11/11	6	+	30375356..30380323	brain and reproductive organ-expressed, putative, expressed
LOC_Os06g50180	Os.50494.1.A1_at	10/11	6	+	30382143..30385892	Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os06g50190	Os.2235.3.S1_x_at	11/11	6	+	30386919..30393175	retrotransposon protein, putative, unclassified
LOC_Os06g50190	Os.52007.1.S1_at	1/11	6	+	30386919..30393175	retrotransposon protein, putative, unclassified
LOC_Os06g50200	NA	NA	6	+	30396269..30399164	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g50210	OsAffx.5157.1.S1_at	11/11	6	+	30400328..30402076	hypothetical protein
LOC_Os06g50220	Os.15039.1.S1_at	11/11	6	+	30407670..30413526	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50494.1.A1_at--827--519	1	Chr06:30383900..30383924 (25 bp)	GCAATCATCTGTGTGGTTTCTCAGA	LOC_Os06g50180
Os.50494.1.A1_at--957--653	1	Chr06:30383621..30383645 (25 bp)	GATTTAGCTGTTGTTTCTCCAATTT	LOC_Os06g50180
Os.50494.1.A1_at--812--291	1	Chr06:30383459..30383482 (24 bp)	AAGGACTGGGCTGGTCAAAGCTTCA	LOC_Os06g50180
Os.50494.1.A1_at--105--235	1	Chr06:30383443..30383467 (25 bp)	AAAGCTTCAGTAGCATTGCTTCTGA	LOC_Os06g50180
Os.50494.1.A1_at--181--241	1	NONE	AAACAGGCAGTTCTGCAGCTTTGCC	NONE
Os.50494.1.A1_at--669--1003	1	Chr06:30382442..30382466 (25 bp)	TAGAGGGTCCATATCCTGGTGTATC	LOC_Os06g50180
Os.50494.1.A1_at--957--69	1	Chr06:30382383..30382407 (25 bp)	ATGAGGACTACTTTGCAGCTCTGCA	LOC_Os06g50180
Os.50494.1.A1_at--640--381	1	Chr06:30382353..30382377 (25 bp)	CTCCTGCGCCAGTTTAATTGTACAT	LOC_Os06g50180
Os.50494.1.A1_at--1104--973	1	Chr06:30382321..30382345 (25 bp)	TAATTTCCTTTTACTTCCATTGACG	LOC_Os06g50180
Os.50494.1.A1_at--587--207	1	Chr06:30382254..30382278 (25 bp)	ACAGGAACCTTAGCAGTGCCAACAT	LOC_Os06g50180
Os.50494.1.A1_at--1073--653	1	Chr06:30382208..30382232 (25 bp)	GATTTTATCTGACATTCTTTCACTG	LOC_Os06g50180

Target Sequence

GCAATCATCTGTGTGGTTTCTCAGATAAATTACCTCAATAAGGCACTGGANACCTTTGATTTAGCTGTTGTTTCTCCAAT
TTATTATGTAATGTTTACGACTCTTACAATAGTGGCAAGTGGAATTATGTTCAAGGACTGGGCTGGTCAAAGCTTCAGTA
GCATTGCTTCTGAATTTTGTGGTCTGNTAACAATTCTTACCGGAACAATTATGTTACACACAGCAAAGGAGGAAGAAACA
GGCAGTTCTGCAGCTTTGCCATGGCCTTTGGATAGAGGGTCCATATCCTGGTGTATCAGTTTAGGGAGCGACAATCTACT
GAAGAATGTCAATGAGGACTACTTTGCAGCTCTGCAAAGTTCTCCTGCGCCAGTTTAATTGTACATTTGGAAGTAATTTC
CTTTTACTTCCATTGACGAAGAAACTTATAGAGTGATGTACAAAATATCNTGCAAATTGCACAGGAACCTTAGCAGTGCC
AACATTCTGGCAGTTTTGTTGTAGAAGATTTTATCTGACATTCTTTCACTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis