Browse Element(s) Details


Os.47383.1.S1_at

Description gb:AK068956.1
DB_XREF= gi:32978980
TID=Os.47383.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002D18, full insert sequence.
FL= gb:AK058743.1 gb:AK068956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5012010/11Novel plant SNARE 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50050Os.22453.1.S1_at11/116+30331407..30335112ATPase, AAA family protein, expressed
LOC_Os06g50060OsAffx.16005.1.S1_at11/116+30335261..30335938Ras-related protein ARA-2, putative, expressed
LOC_Os06g50060OsAffx.16005.1.S1_x_at11/116+30335261..30335938Ras-related protein ARA-2, putative, expressed
LOC_Os06g50070NANA6+30337683..30338296expressed protein
LOC_Os06g50080Os.27765.1.S1_at11/116+30339448..30340810expressed protein
LOC_Os06g50090NANA6+30345016..30345330expressed protein
LOC_Os06g50100Os.53323.1.S1_s_at11/116+30345862..30349036Protein kinase domain containing protein, expressed
LOC_Os06g50110Os.6175.1.S1_at11/116+30351996..30356040expressed protein
LOC_Os06g50120Os.47383.1.S1_at10/116+30356703..30360200Novel plant SNARE 11, putative, expressed
LOC_Os06g50130Os.17198.1.S1_at11/116+30361752..30362812expressed protein
LOC_Os06g50140Os.50481.1.S1_at11/116+30363072..30365664Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g50154Os.10917.1.S1_at11/116+30366404..30373549Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154Os.22946.1.S2_at11/116+30366404..30373549Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154Os.22946.1.S1_at10/116+30366404..30373549Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50170Os.16975.1.S1_at11/116+30375356..30380323brain and reproductive organ-expressed, putative, expressed
LOC_Os06g50180Os.50494.1.A1_at10/116+30382143..30385892Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0045045biological_processsecretory pathway
GO:0009504cellular_componentcell plate
GO:0016020cellular_componentmembrane
GO:0005484molecular_functionSNAP receptor activity
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47383.1.S1_at--266--1031Chr06:30358001..30358025 (25 bp)
AGGTACAGAAACTGCAGCTGCTCTC
LOC_Os06g50120
Os.47383.1.S1_at--77--5071NONE
GCAGCTGCTCTCAAATCACAGACAG
NONE
Os.47383.1.S1_at--890--3471Chr06:30357699..30357722 (24 bp)
CAGGTTGCAACTGATCGCTGCATCA
LOC_Os06g50120
Os.47383.1.S1_at--472--4891Chr06:30357667..30357691 (25 bp)
GCTTTTTCTCATTGTTGCTGGAGTC
LOC_Os06g50120
Os.47383.1.S1_at--666--2751Chr06:30357037..30357061 (25 bp)
AAGACTATCCGAGACATTCCTGGTC
LOC_Os06g50120
Os.47383.1.S1_at--474--7171Chr06:30357015..30357039 (25 bp)
GTCTCGCTCCACCAGTTAGCAGAAG
LOC_Os06g50120
Os.47383.1.S1_at--908--5051Chr06:30356932..30356956 (25 bp)
GCAGCTTGTGCTGTTTAACTCGAAG
LOC_Os06g50120
Os.47383.1.S1_at--455--5311Chr06:30356911..30356935 (25 bp)
GAAGGTCGCAACTACTACTTGAACA
LOC_Os06g50120
Os.47383.1.S1_at--155--10171Chr06:30356865..30356889 (25 bp)
TATACCCATGGGATCCGTGTGCGAG
LOC_Os06g50120
Os.47383.1.S1_at--763--6371Chr06:30356854..30356878 (25 bp)
GATCCGTGTGCGAGGTACTGTAAAA
LOC_Os06g50120
Os.47383.1.S1_at--443--7371Chr06:30356728..30356752 (25 bp)
GTGACAGCAGCGTATGGATCATCCA
LOC_Os06g50120
Target Sequence 
AGGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATNCCATTCATT
TCNCCATTAAAAAGNCATCACAAATGGTGAAAGAAATTGGTAGNCAGGTTGCAACTGATCGCTGCATCATGNCCTTGCTT
TTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCC
TGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAAC
CAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATANTATACCCA
TGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTA
TTCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCGTATGGATCATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis