Browse Element(s) Details


Os.22453.1.S1_at

Description gb:AK100047.1
DB_XREF= gi:32985256
TID=Os.22453.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154C19, full insert sequence.
FL= gb:AK100047.1 gb:AK119628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5005011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50030OsAffx.28195.1.S1_x_at11/116+30300745..30307151CDPK-related protein kinase, putative, expressed
LOC_Os06g50040Os.8977.1.S1_at11/116+30313759..30314670Auxin responsive protein, expressed
LOC_Os06g50050Os.22453.1.S1_at11/116+30331407..30335112ATPase, AAA family protein, expressed
LOC_Os06g50060OsAffx.16005.1.S1_at11/116+30335261..30335938Ras-related protein ARA-2, putative, expressed
LOC_Os06g50060OsAffx.16005.1.S1_x_at11/116+30335261..30335938Ras-related protein ARA-2, putative, expressed
LOC_Os06g50070NANA6+30337683..30338296expressed protein
LOC_Os06g50080Os.27765.1.S1_at11/116+30339448..30340810expressed protein
LOC_Os06g50090NANA6+30345016..30345330expressed protein
LOC_Os06g50100Os.53323.1.S1_s_at11/116+30345862..30349036Protein kinase domain containing protein, expressed
LOC_Os06g50110Os.6175.1.S1_at11/116+30351996..30356040expressed protein
LOC_Os06g50120Os.47383.1.S1_at10/116+30356703..30360200Novel plant SNARE 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22453.1.S1_at--665--8571Chr06:30334542..30334566 (25 bp)
TGGATTCGGCCCTCTGATTCAGAAG
LOC_Os06g50050
Os.22453.1.S1_at--574--5771Chr06:30334566..30334590 (25 bp)
GACGATCAGGTACAGAGCGCAATTT
LOC_Os06g50050
Os.22453.1.S1_at--995--9651Chr06:30334622..30334646 (25 bp)
TCAGAACAGTCAGTCGGAACCGCAA
LOC_Os06g50050
Os.22453.1.S1_at--40--7071Chr06:30334703..30334727 (25 bp)
GTAAGCGCAGGCATTACCTCGATAT
LOC_Os06g50050
Os.22453.1.S1_at--873--10431Chr06:30334730..30334754 (25 bp)
TTAGGTTTTCTAATGCAGCTTGCAA
LOC_Os06g50050
Os.22453.1.S1_at--82--6931Chr06:30334767..30334791 (25 bp)
GTATGGATTCATTTAGCGTCGCGAG
LOC_Os06g50050
Os.22453.1.S1_at--569--6211Chr06:30334789..30334813 (25 bp)
GAGGCTGCGCTGGTTTTTGAAGTTA
LOC_Os06g50050
Os.22453.1.S1_at--741--851Chr06:30334814..30334838 (25 bp)
ATGGCAGCTGGCAATGCTTTGCACT
LOC_Os06g50050
Os.22453.1.S1_at--858--271Chr06:30334864..30334888 (25 bp)
ATATGGCCCGAGTCAGGATTCTATG
LOC_Os06g50050
Os.22453.1.S1_at--757--2931Chr06:30334974..30334998 (25 bp)
AAGGCCCGCTTGCATGGTTTACAAA
LOC_Os06g50050
Os.22453.1.S1_at--460--8971Chr06:30335057..30335081 (25 bp)
TGAAACTAACGCTTGCTTGTCACCC
LOC_Os06g50050
Target Sequence 
TGGATTCGGCCCTCTGATTCAGAAGACGATCAGGTACAGAGCGCAATTTTTGAGATATCTAAGCTGATGTNTCGAATAGT
TCAGAACAGTCAGTCGGAACCGCAAGAGCCATCTTCACCTTAATNTAATCCTTTTGCTAGATCTCATGAAAATCCAAAGG
AGTAAGCGCAGGCATTACCTCGATATCGTTAGGTTTTCTAATGCAGCTTGCAAGATTCAGGGTTTGTATGGATTCATTTA
GCGTCGCGAGGCTGCGCTGGTTTTTGAAGTTAATGGCAGCTGGCAATGCTTTGCACTGATGTTATAAGTTAAATTCAGAA
TTATATGGCCCGAGTCAGGATTCTATGGTTCTGTGAAATTTGTTATCATCACCTTGTATTTTAATTTAATTAAACTACTT
TAGGGTAGACTCTATACATAACGAAGAAAAGAAAGGCCCGCTTGCATGGTTTACAAACAATCTTGTTTTTTTGTCGGAGC
ACTCTGCTGTGACTTGAAATAGATACACGATGAGATGAAACTAACGCTTGCTTGTCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis