Browse Element(s) Details


Os.8977.1.S1_at

Description gb:AK107043.1
DB_XREF= gi:32992252
TID=Os.8977.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C06, full insert sequence.
FL= gb:AK107043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5004011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50020NANA6+30288322..30291653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50030OsAffx.28195.1.S1_x_at11/116+30300745..30307151CDPK-related protein kinase, putative, expressed
LOC_Os06g50040Os.8977.1.S1_at11/116+30313759..30314670Auxin responsive protein, expressed
LOC_Os06g50050Os.22453.1.S1_at11/116+30331407..30335112ATPase, AAA family protein, expressed
LOC_Os06g50060OsAffx.16005.1.S1_at11/116+30335261..30335938Ras-related protein ARA-2, putative, expressed
LOC_Os06g50060OsAffx.16005.1.S1_x_at11/116+30335261..30335938Ras-related protein ARA-2, putative, expressed
LOC_Os06g50070NANA6+30337683..30338296expressed protein
LOC_Os06g50080Os.27765.1.S1_at11/116+30339448..30340810expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8977.1.S1_at--750--10411Chr06:30314300..30314324 (25 bp)
TTATCTGAAGCACCCGCTGTTCGTG
LOC_Os06g50040
Os.8977.1.S1_at--803--7891Chr06:30314244..30314268 (25 bp)
GGTTCGAGCAGAAGGGCGCCATCAC
LOC_Os06g50040
Os.8977.1.S1_at--421--4791Chr06:30314097..30314121 (25 bp)
GCTCGTCGGGACACCACAACAACTT
LOC_Os06g50040
Os.8977.1.S1_at--614--6331Chr06:30314023..30314047 (25 bp)
GATGCATGGTGTTTCTTTGGCTAGC
LOC_Os06g50040
Os.8977.1.S1_at--1030--6831Chr06:30314013..30314037 (25 bp)
GTTTCTTTGGCTAGCTTCTCTCTCT
LOC_Os06g50040
Os.8977.1.S1_at--380--9511Chr06:30313993..30314017 (25 bp)
TCTCTCTTAGATCGATGGATTAATA
LOC_Os06g50040
Os.8977.1.S1_at--866--631Chr06:30313898..30313922 (25 bp)
ATGCATGCATGAGCAGATCTGTCAT
LOC_Os06g50040
Os.8977.1.S1_at--116--6411Chr06:30313883..30313907 (25 bp)
GATCTGTCATGCAGCTGCGGGTTGT
LOC_Os06g50040
Os.8977.1.S1_at--1013--7911Chr06:30313864..30313888 (25 bp)
GGTTGTTCTCTGTTCATCCTTATAG
LOC_Os06g50040
Os.8977.1.S1_at--258--6751Chr06:30313853..30313877 (25 bp)
GTTCATCCTTATAGGACTCTCTCTC
LOC_Os06g50040
Os.8977.1.S1_at--443--3771Chr06:30313817..30313841 (25 bp)
CTCTCTCCTAGTTAAGTTAGATTGT
LOC_Os06g50040
Target Sequence 
TTATCTGAAGCACCCGCTGTTCGTGGGGCTCCTCAAGGAGGCCGAGGAGGAGTTCGGGTTCGAGCAGAAGGGCGCCATCA
CCATCCCCTGCGGCGTCGACCACTTCCGCCGCGTCCAGGGNCATCATCCACCACCAGAAGCACCACCACGGCGGCTCCCA
TGGCGCCGGCGGCGCCGGCGCNGGCNGNCCTCCTCTCCGGCCACGGCTCGTCGGGACACCACAACAACTTCCACATCGCC
GCCTGCTTCAGGGCCTNGATTGAGATGATCATCAGATGATGATGCATGGTGTTTCTTTGGCTAGCTTCTCTCTCTCTTAG
ATCGATGGATTAATAATACTTNAGGGNTTTTAATTTCCTTTTGGNTAGGAATTTAGTCATGGTTTGTGATGATGATCAAA
AAGGATCATGCATGCATGAGCAGATCTGTCATGCAGCTGCGGGTTGTTCTCTGTTCATCCTTATAGGACTCTCTCTCTCT
CTCTCTCTCTCTCTCCTAGTTAAGTTAGATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis