Browse Element(s) Details


OsAffx.16005.1.S1_x_at

Description tigr:9634.m04889
TID=OsAffx.16005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ras family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5006011/11Ras-related protein ARA-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50040Os.8977.1.S1_at11/116+30313759..30314670Auxin responsive protein, expressed
LOC_Os06g50050Os.22453.1.S1_at11/116+30331407..30335112ATPase, AAA family protein, expressed
LOC_Os06g50060OsAffx.16005.1.S1_at11/116+30335261..30335938Ras-related protein ARA-2, putative, expressed
LOC_Os06g50060OsAffx.16005.1.S1_x_at11/116+30335261..30335938Ras-related protein ARA-2, putative, expressed
LOC_Os06g50070NANA6+30337683..30338296expressed protein
LOC_Os06g50080Os.27765.1.S1_at11/116+30339448..30340810expressed protein
LOC_Os06g50090NANA6+30345016..30345330expressed protein
LOC_Os06g50100Os.53323.1.S1_s_at11/116+30345862..30349036Protein kinase domain containing protein, expressed
LOC_Os06g50110Os.6175.1.S1_at11/116+30351996..30356040expressed protein
LOC_Os06g50120Os.47383.1.S1_at10/116+30356703..30360200Novel plant SNARE 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16005.1.S1_x_at--203--6071Chr06:30335824..30335848 (25 bp)
GAGTTCTTCATCGACTCCAAGTCGA
LOC_Os06g50060
OsAffx.16005.1.S1_x_at--637--4971Chr06:30335793..30335817 (25 bp)
GCATCGAGTTCCAGACGCGGACGGT
LOC_Os06g50060
OsAffx.16005.1.S1_x_at--897--3931Chr06:30335776..30335800 (25 bp)
CGGACGGTGGAGATCGGCGGGAAGC
LOC_Os06g50060
OsAffx.16005.1.S1_x_at--1134--6151Chr06:30335454..30335478 (25 bp)
GGGACAACGTCGAGGAGGCCTTCCT
LOC_Os06g50060
OsAffx.16005.1.S1_x_at--364--9271Chr06:30335424..30335448 (25 bp)
TCCTCCGGGAGATCCATGCCATCGT
LOC_Os06g50060
OsAffx.16005.1.S1_x_at--694--3791Chr06:30335422..30335446 (25 bp)
CTCCGGGAGATCCATGCCATCGTCT
LOC_Os06g50060
OsAffx.16005.1.S1_x_at--911--4251Chr06:30335420..30335444 (25 bp)
CCGGGAGATCCATGCCATCGTCTCG
LOC_Os06g50060
OsAffx.16005.1.S1_x_at--582--8051Chr06:30335417..30335441 (25 bp)
GGAGATCCATGCCATCGTCTCGCGG
LOC_Os06g50060
OsAffx.16005.1.S1_x_at--690--1291Chr06:30335415..30335439 (25 bp)
AGATCCATGCCATCGTCTCGCGGAG
LOC_Os06g50060
OsAffx.16005.1.S1_x_at--910--571Chr06:30335413..30335437 (25 bp)
ATCCATGCCATCGTCTCGCGGAGGT
LOC_Os06g50060
OsAffx.16005.1.S1_x_at--486--591Chr06:30335409..30335433 (25 bp)
ATGCCATCGTCTCGCGGAGGTCGCT
LOC_Os06g50060
Target Sequence 
GAGTTCTTCATCGACTCCAAGTCGACCATCGGCATCGAGTTCCAGACGCGGACGGTGGAGATCGGCGGGAAGCGGGTGAA
GGCCCAGATCTGGGACACCGCGGGGCAGGAGAGGTACCGCGCCGTCACCAGCGCCTACTACCGCGGCGCCCTCGGCGCCA
TGCTCGTCTACGACGTCACCAGCCGCCGGAGCTTCCACCACGCCGCCCGCTGGCTCCACGACCTCCGCGCCCACGCCGAC
AACTCCATCGTCGTCATGCTCATCGGCAACAAGGCCGACCTCTCCCACGCCCGCGCCGTCGCCGCCGACGAGGCCGCCGC
CTTCGCCGAGGACCAGGGCCTCTTCTTCTCCGAGGCGTCGGCGCTCAGCGGGGACAACGTCGAGGAGGCCTTCCTCGGCC
TCCTCCGGGAGATCCATGCCATCGTCTCGCGGAGGTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16005.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis