Browse Element(s) Details


Os.27765.1.S1_at

Description gb:AK059793.1
DB_XREF= gi:32969811
TID=Os.27765.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-E07, full insert sequence.
FL= gb:AK071528.1 gb:AK059793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5008011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50040Os.8977.1.S1_at11/116+30313759..30314670Auxin responsive protein, expressed
LOC_Os06g50050Os.22453.1.S1_at11/116+30331407..30335112ATPase, AAA family protein, expressed
LOC_Os06g50060OsAffx.16005.1.S1_at11/116+30335261..30335938Ras-related protein ARA-2, putative, expressed
LOC_Os06g50060OsAffx.16005.1.S1_x_at11/116+30335261..30335938Ras-related protein ARA-2, putative, expressed
LOC_Os06g50070NANA6+30337683..30338296expressed protein
LOC_Os06g50080Os.27765.1.S1_at11/116+30339448..30340810expressed protein
LOC_Os06g50090NANA6+30345016..30345330expressed protein
LOC_Os06g50100Os.53323.1.S1_s_at11/116+30345862..30349036Protein kinase domain containing protein, expressed
LOC_Os06g50110Os.6175.1.S1_at11/116+30351996..30356040expressed protein
LOC_Os06g50120Os.47383.1.S1_at10/116+30356703..30360200Novel plant SNARE 11, putative, expressed
LOC_Os06g50130Os.17198.1.S1_at11/116+30361752..30362812expressed protein
LOC_Os06g50140Os.50481.1.S1_at11/116+30363072..30365664Glycosyl hydrolase family 9 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27765.1.S1_at--130--6111Chr06:30339785..30339809 (25 bp)
GAGTCGTGCTTCCTCTGCAAGAGCA
LOC_Os06g50080
Os.27765.1.S1_at--1015--9011Chr06:30339800..30339824 (25 bp)
TGCAAGAGCAGCATCGCCGGCGACC
LOC_Os06g50080
Os.27765.1.S1_at--893--8371Chr06:30340090..30340114 (25 bp)
GGCGAGGTCTCCGATGATGCACCGC
LOC_Os06g50080
Os.27765.1.S1_at--343--8411Chr06:30340153..30340177 (25 bp)
GGCCGCCACCAGCTAGTGTTGTGTA
LOC_Os06g50080
Os.27765.1.S1_at--874--7431Chr06:30340173..30340197 (25 bp)
GTGTACTCCTATACTAACATGGTCG
LOC_Os06g50080
Os.27765.1.S1_at--902--6011Chr06:30340197..30340221 (25 bp)
GAGAGATGAATCTGCCGCTGCGTTC
LOC_Os06g50080
Os.27765.1.S1_at--156--4531Chr06:30340210..30340234 (25 bp)
GCCGCTGCGTTCATGATCAACTGCA
LOC_Os06g50080
Os.27765.1.S1_at--268--4832Chr06:30340249..30340273 (25 bp)
GCTCATCATCATCAAACGCCAAAGT
LOC_Os06g50080
Os.27765.1.S1_at--233--6971Chr06:30340311..30340335 (25 bp)
GTAGCCTAGGTAGTTGTAGATCCAT
LOC_Os06g50080
Os.27765.1.S1_at--850--10351Chr06:30340359..30340383 (25 bp)
TTTTTGCCATCTTCATTTTGTTTGT
LOC_Os06g50080
Os.27765.1.S1_at--143--10751Chr06:30340385..30340409 (25 bp)
TTGTGGTTTTCACACGGTTCCATGT
LOC_Os06g50080
Target Sequence 
GAGTCGTGCTTCCTCTGCAAGAGCAGCATCGCCGGCGACCGCGACATCTTCATGTACAGAGGGGATGCAGCGTTCTGCAG
CGACGACTGCAGGCAGGAGCAGATGGACATGGACGAGGCGCTGCAGGCGGTGGCGCGCCGCCATCGCCTCCGTTCGTCGG
CGGCGCCGGCTTCCGCCGAGGCAGCAGCGNCGGCGCCGGCGAGGTCTCCGATGATGCACCGCCGGCCGACCATCGCCAAC
TTCGCGGCACGCACTCCAGTGGCCGCCACCAGCTAGTGTTGTGTACTCCTATACTAACATGGTCGAGAGATGAATCTGCC
GCTGCGTTCATGATCAACTGCATGCATGCACGCATCGCTCATCATCATCAAACGCCAAAGTTAAATTAAACAGTGTGGAT
TGGCATATATATATGTATGTAGCCTAGGTAGTTGTAGATCCATGGAATATTACATAGATCCGTGTTTTTTTGCCATCTTC
ATTTTGTTTGTTTTGTGGTTTTCACACGGTTCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis