Browse Element(s) Details


OsAffx.28195.1.S1_x_at

Description tigr:9634.m04886
TID=OsAffx.28195.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 133967 calcium-dependent protein kinase-related kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5003011/11CDPK-related protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49990Os.23179.1.S1_at9/116+30273491..30278004UPF0183 protein, putative, expressed
LOC_Os06g50000Os.46326.1.S1_at11/116+30278368..30280743Complex 1 protein containing protein, expressed
LOC_Os06g50010Os.47463.1.S1_x_at6/116+30281923..30286785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50010Os.14491.2.S1_x_at5/116+30281923..30286785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50020NANA6+30288322..30291653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50030OsAffx.28195.1.S1_x_at11/116+30300745..30307151CDPK-related protein kinase, putative, expressed
LOC_Os06g50040Os.8977.1.S1_at11/116+30313759..30314670Auxin responsive protein, expressed
LOC_Os06g50050Os.22453.1.S1_at11/116+30331407..30335112ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28195.1.S1_x_at--431--1971Chr06:30304969..30305102 (25 bp)
ACTGACTCATCCTTGGTTGCGAGAT
LOC_Os06g50030
OsAffx.28195.1.S1_x_at--108--2471Chr06:30305104..30305128 (25 bp)
AACAAAGGCAGATCCCGCTGGACAT
LOC_Os06g50030
OsAffx.28195.1.S1_x_at--984--351Chr06:30305952..30305974 (23 bp)
ATCACTTGACAACTTTCGGACGGCA
LOC_Os06g50030
OsAffx.28195.1.S1_x_at--79--3951Chr06:30305968..30306122 (25 bp)
CGGACGGCACTAACGCGATATTTAA
LOC_Os06g50030
OsAffx.28195.1.S1_x_at--245--5111Chr06:30306137..30306161 (25 bp)
GAATCGAGGGTTCTTGAATTTTTGC
LOC_Os06g50030
OsAffx.28195.1.S1_x_at--525--4631Chr06:30306668..30306690 (23 bp)
GCGTTGGAACCACTTGCATACAGAA
LOC_Os06g50030
OsAffx.28195.1.S1_x_at--3--5371Chr06:30306702..30306726 (25 bp)
GAAGAGTTCTGTGCCGCAGCAATCA
LOC_Os06g50030
OsAffx.28195.1.S1_x_at--553--1471Chr06:30306719..30306743 (25 bp)
AGCAATCAGTCCTTACCAGCTTGAG
LOC_Os06g50030
OsAffx.28195.1.S1_x_at--809--9831Chr06:30307018..30307042 (25 bp)
TAAATCTTGCTCCAACTCATTACTC
LOC_Os06g50030
OsAffx.28195.1.S1_x_at--1071--3751Chr06:30307033..30307057 (25 bp)
CTCATTACTCCATCGTTCAAGACTG
LOC_Os06g50030
OsAffx.28195.1.S1_x_at--149--851Chr06:30307072..30307096 (25 bp)
ATGGCAAGCTAAACTTTCTCGGGTT
LOC_Os06g50030
Target Sequence 
ACTGACTCATCCTTGGTTGCGAGATGAACAAAGGCAGATCCCGCTGGACATACTCATCTTCAGATTAATTAAGCAATACC
TCCGCGCTACACCTCTTAAACGGTTGGCATTAAAGGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAA
CTGCAGTTTAAACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTCGGACGGCACTAACGCGATATTTAAC
TGATGCTATGAAGGAATCGAGGGTTCTTGAATTTTTGCATGCGTTGGAACCACTTGCATACAGAAGAATGGACTTTGAAG
AGTTCTGTGCCGCAGCAATCAGTCCTTACCAGCTTGAGGCACTGGAAAGGTGGGAGGAGATTGCTGGAACAGCTTTCCAG
CAATTTGAACAAGAGGGCAACCGAGTCATATCAGTTGAGGAATTAGCACAGGAATTAAATCTTGCTCCAACTCATTACTC
CATCGTTCAAGACTGGATCAGAAAATCCGATGGCAAGCTAAACTTTCTCGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28195.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis