Browse Element(s) Details


Os.46326.1.S1_at

Description gb:AK121079.1
DB_XREF= gi:37990702
TID=Os.46326.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062M13, full insert sequence.
FL= gb:AK121079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5000011/11Complex 1 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49960Os.31312.2.S1_x_at4/116+30251030..30254277retrotransposon protein, putative, unclassified
LOC_Os06g49960Os.31312.5.S1_x_at4/116+30251030..30254277retrotransposon protein, putative, unclassified
LOC_Os06g49970Os.50953.1.S1_at11/116+30261973..30265888Alpha-amylase isozyme C2 precursor, putative, expressed
LOC_Os06g49980OsAffx.16004.1.S1_s_at11/116+30268980..30271803expressed protein
LOC_Os06g49990Os.23179.1.S1_at9/116+30273491..30278004UPF0183 protein, putative, expressed
LOC_Os06g50000Os.46326.1.S1_at11/116+30278368..30280743Complex 1 protein containing protein, expressed
LOC_Os06g50010Os.47463.1.S1_x_at6/116+30281923..30286785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50010Os.14491.2.S1_x_at5/116+30281923..30286785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50020NANA6+30288322..30291653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50030OsAffx.28195.1.S1_x_at11/116+30300745..30307151CDPK-related protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46326.1.S1_at--37--2211Chr06:30280268..30280292 (25 bp)
ACAACCCGGATGTGATCGATAGGCT
LOC_Os06g50000
Os.46326.1.S1_at--883--7011Chr06:30280222..30280246 (25 bp)
GTACAGGAATTTCCAGCATCCCGAT
LOC_Os06g50000
Os.46326.1.S1_at--251--3511Chr06:30279483..30279507 (25 bp)
CATGGGCTCCTGGTGGCAGTAAATT
LOC_Os06g50000
Os.46326.1.S1_at--387--2111Chr06:30278699..30278723 (25 bp)
ACAGGAGCCCTGCTGCATCTAGGAG
LOC_Os06g50000
Os.46326.1.S1_at--1057--5931Chr06:30278677..30278701 (25 bp)
GAGCAGAACTTAGCACCTCCAGGGT
LOC_Os06g50000
Os.46326.1.S1_at--869--2731Chr06:30278589..30278613 (25 bp)
AAGAACGAAGCCACTGGTCTGTCAC
LOC_Os06g50000
Os.46326.1.S1_at--50--10631Chr06:30278556..30278580 (25 bp)
TTCGTTTTTCCATCAGCTAGTGCAT
LOC_Os06g50000
Os.46326.1.S1_at--1049--331Chr06:30278522..30278546 (25 bp)
ATACACATCGCTATGCCTATGCATC
LOC_Os06g50000
Os.46326.1.S1_at--809--8851Chr06:30278450..30278474 (25 bp)
TGATCCATCCAACCTACTTGCATTT
LOC_Os06g50000
Os.46326.1.S1_at--254--2071Chr06:30278435..30278459 (25 bp)
ACTTGCATTTGGTTGTCAGCGTGGC
LOC_Os06g50000
Os.46326.1.S1_at--957--8611Chr06:30278400..30278424 (25 bp)
TGGGCCGTTGCCTTTTTATTATCCG
LOC_Os06g50000
Target Sequence 
ACAACCCGGATGTGATCGATAGGCTTATCGATGATGCGGAAGCGCAGTACAGGAATTTCCAGCATCCCGATCCCTACATT
GTCCCATGGGCTCCTGGTGGCAGTAAATTCACAAGAAACCCTCCTCCACCTAAAGGGATCGAGATTATCTACAACTATGG
AAAAGAAGACTGATGAACAGGAGCCCTGCTGCATCTAGGAGCAGAACTTAGCACCTCCAGGGTGCAAACAACTTAATTTC
CCTTTTTCCAGTTGATAACGTGCAATCGACATGTTGTATGATCAATAAGAACGAAGCCACTGGTCTGTCACCCTTTTGTT
TCGTTTTTCCATCAGCTAGTGCATTGTTGTTACATACACATCGCTATGCCTATGCATCATTTATCTTTCAGTCAAGCATA
AANTGCTTAATGTGTTACGTTCGATTGATCCATCCAACCTACTTGCATTTGGTTGTCAGCGTGGCGTCACAACTNTGGGC
CGTTGCCTTTTTATTATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis