Browse Element(s) Details


OsAffx.16004.1.S1_s_at

Description tigr:9634.m04880
TID=OsAffx.16004.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4998011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49950OsAffx.9045.1.S1_x_at3/116+30243637..30250401retrotransposon protein, putative, unclassified
LOC_Os06g49950OsAffx.9045.1.S1_at3/116+30243637..30250401retrotransposon protein, putative, unclassified
LOC_Os06g49950OsAffx.22492.1.S1_at1/116+30243637..30250401retrotransposon protein, putative, unclassified
LOC_Os06g49950OsAffx.22492.1.S1_x_at1/116+30243637..30250401retrotransposon protein, putative, unclassified
LOC_Os06g49960Os.31312.2.S1_x_at4/116+30251030..30254277retrotransposon protein, putative, unclassified
LOC_Os06g49960Os.31312.5.S1_x_at4/116+30251030..30254277retrotransposon protein, putative, unclassified
LOC_Os06g49970Os.50953.1.S1_at11/116+30261973..30265888Alpha-amylase isozyme C2 precursor, putative, expressed
LOC_Os06g49980OsAffx.16004.1.S1_s_at11/116+30268980..30271803expressed protein
LOC_Os06g49990Os.23179.1.S1_at9/116+30273491..30278004UPF0183 protein, putative, expressed
LOC_Os06g50000Os.46326.1.S1_at11/116+30278368..30280743Complex 1 protein containing protein, expressed
LOC_Os06g50010Os.47463.1.S1_x_at6/116+30281923..30286785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50010Os.14491.2.S1_x_at5/116+30281923..30286785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50020NANA6+30288322..30291653transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16004.1.S1_s_at--168--1811Chr06:30270729..30270753 (25 bp)
ACCCGCAACTGCCTATTTGTGTTGG
LOC_Os06g49980
OsAffx.16004.1.S1_s_at--1000--2411Chr06:30270304..30270328 (25 bp)
AAAACTTCGACTAATCAGGCTTCAT
LOC_Os06g49980
OsAffx.16004.1.S1_s_at--952--391Chr06:30270291..30270315 (25 bp)
ATCAGGCTTCATCTCACCATAAAAA
LOC_Os06g49980
OsAffx.16004.1.S1_s_at--74--2651Chr06:30269544..30269568 (25 bp)
AACCACGGCGATATAAGCCTGCACA
LOC_Os06g49980
OsAffx.16004.1.S1_s_at--559--6511Chr06:30269319..30269343 (25 bp)
GATATCATGTATCCTTACCGCAAAC
LOC_Os06g49980
OsAffx.16004.1.S1_s_at--375--10611Chr06:30269215..30269239 (25 bp)
TTCCTGAAACACCTGGCTAGCACAT
LOC_Os06g49980
OsAffx.16004.1.S1_s_at--804--8551Chr06:30269166..30269190 (25 bp)
TGGAGGCCAAGTTGCACTCTATTCC
LOC_Os06g49980
OsAffx.16004.1.S1_s_at--535--2011Chr06:30269151..30269175 (25 bp)
ACTCTATTCCGCTAGCTGTTTGGTG
LOC_Os06g49980
OsAffx.16004.1.S1_s_at--733--8771Chr06:30269135..30269159 (25 bp)
TGTTTGGTGCCTTCACTTCATATCA
LOC_Os06g49980
OsAffx.16004.1.S1_s_at--538--10571Chr06:30269094..30269118 (25 bp)
TTCTCCCGCTATTGCAATGAGTTCA
LOC_Os06g49980
OsAffx.16004.1.S1_s_at--594--2471Chr06:30269027..30269051 (25 bp)
AACACACAATATCACCTGCTTGAGG
LOC_Os06g49980
Target Sequence 
ACCCGCAACTGCCTATTTGTGTTGGAATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCAT
AAAAAGGAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGAGGAGATGATTTCTTAACCAAATTTCAGAGGAATGC
TGGACTTGTGGCTAATGGTGTAGCAAGGAACTTAAATAAAGTTGGGGCCTACATTAAAGACACCATGGATGATATCATGT
ATCCTTACCGCAAACGTCCAAAGTAAAACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGT
GTCTAATCCACTACTTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGGAGGCCAAGTTGCAC
TCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCCCCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCA
TTTTACTGGGTTCCATCCAGCAATGTATAGGAGGTATGATGTAACACACAATATCACCTGCTTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16004.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis