Browse Element(s) Details


Os.16975.1.S1_at

Description gb:AK102724.1
DB_XREF= gi:32987933
TID=Os.16975.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105L03, full insert sequence.
FL= gb:AK059304.1 gb:AK102724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5017011/11brain and reproductive organ-expressed, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50110Os.6175.1.S1_at11/116+30351996..30356040expressed protein
LOC_Os06g50120Os.47383.1.S1_at10/116+30356703..30360200Novel plant SNARE 11, putative, expressed
LOC_Os06g50130Os.17198.1.S1_at11/116+30361752..30362812expressed protein
LOC_Os06g50140Os.50481.1.S1_at11/116+30363072..30365664Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g50154Os.10917.1.S1_at11/116+30366404..30373549Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154Os.22946.1.S2_at11/116+30366404..30373549Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154Os.22946.1.S1_at10/116+30366404..30373549Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50170Os.16975.1.S1_at11/116+30375356..30380323brain and reproductive organ-expressed, putative, expressed
LOC_Os06g50180Os.50494.1.A1_at10/116+30382143..30385892Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os06g50190Os.2235.3.S1_x_at11/116+30386919..30393175retrotransposon protein, putative, unclassified
LOC_Os06g50190Os.52007.1.S1_at1/116+30386919..30393175retrotransposon protein, putative, unclassified
LOC_Os06g50200NANA6+30396269..30399164retrotransposon protein, putative, unclassified, expressed
LOC_Os06g50210OsAffx.5157.1.S1_at11/116+30400328..30402076hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16975.1.S1_at--750--10031Chr06:30376099..30376599 (25 bp)
TAGAGAGTTCTCAGCACTTCAATGC
LOC_Os06g50170
Os.16975.1.S1_at--1059--7671Chr06:30376070..30376094 (25 bp)
GGGTTACCTATCATGTCAGCTCCAG
LOC_Os06g50170
Os.16975.1.S1_at--924--7031Chr06:30376046..30376070 (25 bp)
GTAAATGACTATCCCTGGAGCCCTA
LOC_Os06g50170
Os.16975.1.S1_at--700--2831Chr06:30375874..30375898 (25 bp)
AAGTTTTGCAGCGATTCTATCCCTC
LOC_Os06g50170
Os.16975.1.S1_at--703--2711Chr06:30375726..30375750 (25 bp)
AAGCATCTCTGTTACTGCCGGCTTG
LOC_Os06g50170
Os.16975.1.S1_at--586--7171Chr06:30375697..30375721 (25 bp)
GTCTGCTCGCAAGTTGCAACCTGTA
LOC_Os06g50170
Os.16975.1.S1_at--53--7951Chr06:30375601..30375625 (25 bp)
GGATAGGTGCGCTTCTGTTTGACAA
LOC_Os06g50170
Os.16975.1.S1_at--183--6811Chr06:30375541..30375565 (25 bp)
GTTTTGTTGGTTAACCCCATTGCTG
LOC_Os06g50170
Os.16975.1.S1_at--709--10031Chr06:30375509..30375533 (25 bp)
TAGACTCCTACCTTGTGATTGCTGG
LOC_Os06g50170
Os.16975.1.S1_at--1021--6851Chr06:30375404..30375428 (25 bp)
GTTTGATGCAAGTGACCTCTGGCTG
LOC_Os06g50170
Os.16975.1.S1_at--648--3771Chr06:30375388..30375412 (25 bp)
CTCTGGCTGCTATGGTTTACTGTAC
LOC_Os06g50170
Target Sequence 
TAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAGCTCCAGTAAATGACTATCCCTGGAGCCCTAGA
TGGGATCCAACAGAAATGGTTGAACGCATCTATGANTTTTTGGTTGACGAGTGCCAAACTTTCAAGAAGTTTTGCAGCGA
TTCTATCCCTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAAC
CTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGANGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGAT
AGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACACTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCT
GCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGNTCCTGCCATGTACATACAGATACCGC
ACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis