Browse Element(s) Details


OsAffx.5157.1.S1_at

Description tigr:9634.m04905
TID=OsAffx.5157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5021011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50170Os.16975.1.S1_at11/116+30375356..30380323brain and reproductive organ-expressed, putative, expressed
LOC_Os06g50180Os.50494.1.A1_at10/116+30382143..30385892Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os06g50190Os.2235.3.S1_x_at11/116+30386919..30393175retrotransposon protein, putative, unclassified
LOC_Os06g50190Os.52007.1.S1_at1/116+30386919..30393175retrotransposon protein, putative, unclassified
LOC_Os06g50200NANA6+30396269..30399164retrotransposon protein, putative, unclassified, expressed
LOC_Os06g50210OsAffx.5157.1.S1_at11/116+30400328..30402076hypothetical protein
LOC_Os06g50220Os.15039.1.S1_at11/116+30407670..30413526expressed protein
LOC_Os06g50230Os.4999.1.S1_at11/116+30416663..30417847expressed protein
LOC_Os06g50240OsAffx.16007.1.S1_at10/116+30419080..30420779Thaumatin protein, putative
LOC_Os06g50250OsAffx.28197.1.S1_at11/116+30421609..30422507hypothetical protein
LOC_Os06g50260OsAffx.21897.5.S1_x_at6/116+30423968..30426909retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5157.1.S1_at--1155--1111Chr06:30400903..30400927 (25 bp)
AGTGCAAGTTCATTGTCCTCACGAC
LOC_Os06g50210
OsAffx.5157.1.S1_at--1068--3431Chr06:30400777..30400801 (25 bp)
CAGTTGGCGGGCTATGCAGAGAAAA
LOC_Os06g50210
OsAffx.5157.1.S1_at--1159--7011Chr06:30400732..30400756 (25 bp)
GTACAGAAGGTTTCTCTCCCAGGAA
LOC_Os06g50210
OsAffx.5157.1.S1_at--1110--2551Chr06:30400689..30400713 (25 bp)
AACGTGGACCTGAGATTCGGTTGGA
LOC_Os06g50210
OsAffx.5157.1.S1_at--525--6471Chr06:30400654..30400678 (25 bp)
GATACAACTTCATTACCTTCTTGTG
LOC_Os06g50210
OsAffx.5157.1.S1_at--680--3651Chr06:30400638..30400662 (25 bp)
CTTCTTGTGAGATGATACCGGCTAT
LOC_Os06g50210
OsAffx.5157.1.S1_at--731--7111Chr06:30400602..30400626 (25 bp)
GTCAGCAAGCTTCCTACGGTGATGA
LOC_Os06g50210
OsAffx.5157.1.S1_at--334--1071Chr06:30400546..30400570 (25 bp)
AGGGAACCTCAAACACAGGGTGCAA
LOC_Os06g50210
OsAffx.5157.1.S1_at--670--5331Chr06:30400517..30400541 (25 bp)
GAAGTCAGGGAGAGTCATGCAAGCT
LOC_Os06g50210
OsAffx.5157.1.S1_at--438--5171Chr06:30400499..30400523 (25 bp)
GCAAGCTCTGCTGGAATATCAACAA
LOC_Os06g50210
OsAffx.5157.1.S1_at--90--8991Chr06:30400445..30400469 (25 bp)
TGAATCGGGCGTTTCTTCACGGGCA
LOC_Os06g50210
Target Sequence 
AGTGCAAGTTCATTGTCCTCACGACAGAAACAAGGAGATCAGGGGGAGGACTTGGTTCCACCAAGAGTGGACGCTCATGA
TGGTTTTGAGTCTGCAAAGAAGGAAGGGGACACACAGATTGATGAACAGTTGGCGGGCTATGCAGAGAAAATGAAGGTGG
GGGAGACAGAAGTACAGAAGGTTTCTCTCCCAGGAAGAGAGGGAGCAAGCCATAAACGTGGACCTGAGATTCGGTTGGAT
GGTGTGGAAGATACAACTTCATTACCTTCTTGTGAGATGATACCGGCTATTAAGACTATAAGTCAGCAAGCTTCCTACGG
TGATGAATTGTCTGAAGATTGCAGTGGAGAGGACAGGAGGGAACCTCAAACACAGGGTGCAACAAAGAAGTCAGGGAGAG
TCATGCAAGCTCTGCTGGAATATCAACAAATGGTGGAAGAAAGCAGCAAATCTGTGTTTGAATCGGGCGTTTCTTCACGG
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis