Browse Element(s) Details


Os.4999.1.S1_at

Description gb:AK071515.1
DB_XREF= gi:32981538
TID=Os.4999.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099H07, full insert sequence.
FL= gb:AK071515.1 gb:AK068387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5023011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50190Os.2235.3.S1_x_at11/116+30386919..30393175retrotransposon protein, putative, unclassified
LOC_Os06g50190Os.52007.1.S1_at1/116+30386919..30393175retrotransposon protein, putative, unclassified
LOC_Os06g50200NANA6+30396269..30399164retrotransposon protein, putative, unclassified, expressed
LOC_Os06g50210OsAffx.5157.1.S1_at11/116+30400328..30402076hypothetical protein
LOC_Os06g50220Os.15039.1.S1_at11/116+30407670..30413526expressed protein
LOC_Os06g50230Os.4999.1.S1_at11/116+30416663..30417847expressed protein
LOC_Os06g50240OsAffx.16007.1.S1_at10/116+30419080..30420779Thaumatin protein, putative
LOC_Os06g50250OsAffx.28197.1.S1_at11/116+30421609..30422507hypothetical protein
LOC_Os06g50260OsAffx.21897.5.S1_x_at6/116+30423968..30426909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50270NANA6+30427226..30433336retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50280OsAffx.28198.1.S1_at11/116+30433756..30436762F-box domain containing protein
LOC_Os06g50290NANA6+30438406..30442234transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4999.1.S1_at--865--9431Chr06:30417251..30417275 (25 bp)
TCGGATCCATCATAGAAGGCCCAGA
LOC_Os06g50230
Os.4999.1.S1_at--959--2931Chr06:30417266..30417290 (25 bp)
AAGGCCCAGATCGAAGAGGAAAAGA
LOC_Os06g50230
Os.4999.1.S1_at--809--10191Chr06:30417306..30417330 (25 bp)
TATTTGCAGAGGAGCCCTCCATTTA
LOC_Os06g50230
Os.4999.1.S1_at--186--971Chr06:30417315..30417339 (25 bp)
AGGAGCCCTCCATTTACCATCTATT
LOC_Os06g50230
Os.4999.1.S1_at--494--5951Chr06:30417502..30417526 (25 bp)
GAGCAAAGTGTTGCCGCGCCGGCGA
LOC_Os06g50230
Os.4999.1.S1_at--721--4731Chr06:30417604..30417628 (25 bp)
GCTGTAACACGAAGAGAGGCAATTT
LOC_Os06g50230
Os.4999.1.S1_at--818--3291Chr06:30417736..30417760 (25 bp)
CAAATCATCATCGTTGAGTACTAAT
LOC_Os06g50230
Os.4999.1.S1_at--1104--6991Chr06:30417753..30417777 (25 bp)
GTACTAATTTGAAGAACACTCGAAT
LOC_Os06g50230
Os.4999.1.S1_at--1034--5491Chr06:30417766..30417790 (25 bp)
GAACACTCGAATGTGTATCTTTGGT
LOC_Os06g50230
Os.4999.1.S1_at--512--7431Chr06:30417778..30417802 (25 bp)
GTGTATCTTTGGTGATTCAAGTTTT
LOC_Os06g50230
Os.4999.1.S1_at--696--10372Chr06:30417801..30417825 (25 bp)
TTTTAATTTTTGCAGTTACCTGAAT
LOC_Os06g50230
Target Sequence 
TCGGATCCATCATAGAAGGCCCAGATCGAAGAGGAAAAGAGGAAGCGGAGCGAGATATTTGCAGAGGAGCCCTCCATTTA
CCATCTATTGTCAACAAGGTCCTCCCGCGACCATCTCGGCCGTTCGATCGACTTGTGCGGCGCAGATTGAGCCAAAAAGA
GAGGCGCAGTGCGGATGTTTTCCTATGGGACCCTCAAGTATTCGGTATTATCAAGCATACCCCCATCCCGCCGNCNNCGG
CGGCGGCGGCGGCGGAGCAAAGTGTTGCCGCGCCGGCGAGTACTGCGGTGATCGCCGGCGTTTCGTNGGGGATAACACCG
CTAATGCATGGTTCTTCTCCTNCAATCCTGTGTATATGCTGTAACACGAAGAGAGGCAATTTTAGAGAACTCTTTTGTGT
GCTGATTAGCTTGTTTATATAATAGGTTTTAGCTCTGTCTCTCTCAACTGTAAATGATCAANAAACTATTGTTTCTTCTC
TTTCCTTTTCAAATCATCATCGTTGAGTACTAATTTGAAGAACACTCGAATGTGTATCTTTGGTGATTCAAGTTTTTTAA
TTTTTGCAGTTACCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis