Browse Element(s) Details


OsAffx.16009.1.S1_at

Description tigr:9634.m04929
TID=OsAffx.16009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5043011/11hypothetical protein
LOC_Os06g506399/11hypothetical protein
LOC_Os06g507899/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50390Os.27255.2.S1_x_at11/116+30508420..30511305Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g50400Os.22908.1.S1_at11/116+30519197..30520347Alpha-expansin 11 precursor, putative, expressed
LOC_Os06g50410NANA6+30520810..30522036hypothetical protein
LOC_Os06g50420OsAffx.16008.1.S1_at11/116+30527098..30527733Plastocyanin-like domain containing protein
LOC_Os06g50430OsAffx.16009.1.S1_at11/116+30528301..30529521hypothetical protein
LOC_Os06g50440OsAffx.16010.1.S1_at11/116+30536134..30537527hypothetical protein
LOC_Os06g50450OsAffx.28200.1.S1_at9/116+30541969..30549641expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16009.1.S1_at--310--6493Chr06:30529088..30529112 (25 bp)
GATACCTCAGTGACAGCGAGTCCTT
LOC_Os06g50430
OsAffx.16009.1.S1_at--283--1653Chr06:30529102..30529126 (25 bp)
AGCGAGTCCTTCTATCGGGACATCA
LOC_Os06g50430
OsAffx.16009.1.S1_at--64--2831Chr06:30529153..30529177 (25 bp)
AAGTACGCCGAGATGGAAATCACCA
LOC_Os06g50430
OsAffx.16009.1.S1_at--859--2633Chr06:30529197..30529221 (25 bp)
AACCATAATATCCTCCGGTGATCGC
LOC_Os06g50430
OsAffx.16009.1.S1_at--925--3973Chr06:30529212..30529236 (25 bp)
CGGTGATCGCACCATGCCTGCAGAT
LOC_Os06g50430
OsAffx.16009.1.S1_at--394--8833Chr06:30529245..30529269 (25 bp)
TGATTCGTTCCTCGAATGGGTTCGC
LOC_Os06g50430
OsAffx.16009.1.S1_at--1035--8553Chr06:30529336..30529360 (25 bp)
TGGAGGCTCACTACATGGACCATGC
LOC_Os06g50430
OsAffx.16009.1.S1_at--991--5713Chr06:30529396..30529420 (25 bp)
GACTGCACAGCTAACTTGCATGATT
LOC_Os06g50430
OsAffx.16009.1.S1_at--954--4993Chr06:30529413..30529437 (25 bp)
GCATGATTTCCATGTCGTCGACAAC
LOC_Os06g50430
OsAffx.16009.1.S1_at--211--7233Chr06:30529429..30529453 (25 bp)
GTCGACAACACAGCCCATCATGGGT
LOC_Os06g50430
OsAffx.16009.1.S1_at--219--9131Chr06:30529454..30529478 (25 bp)
TGCTGGATAAGCTCATTGTCGAAAC
LOC_Os06g50430
Target Sequence 
GATACCTCAGTGACAGCGAGTCCTTCTATCGGGACATCACCGTCAGCCAACACAAGGACTTCATCAAGTACGCCGAGATG
GAAATCACCATGCCAAGAGTTGTGACCAAAACCATAATATCCTCCGGTGATCGCACCATGCCTGCAGATGATCCTCCTGA
TTCGTTCCTCGAATGGGTTCGCCGGAGCAGAGAACCTCAGCCTCAGCCGACGACACGGCAGCGCTCCTCCGTCCGGCGGC
CTGGCCAGTGGAGGCTCACTACATGGACCATGCCTATCCCGGTCACTTCATGGGAGGACTGGCGCCCTGACTGCACAGCT
AACTTGCATGATTTCCATGTCGTCGACAACACAGCCCATCATGGGTTGCTGGATAAGCTCATTGTCGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis