Browse Element(s) Details


OsAffx.16008.1.S1_at

Description tigr:9634.m04928
TID=OsAffx.16008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plastocyanin-like domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5065011/11Plastocyanin-like domain containing protein
LOC_Os06g5042011/11Plastocyanin-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50610NANA6+30632805..30633251transposon protein, putative, unclassified
LOC_Os06g50620OsAffx.16011.1.S1_at6/116+30637239..30638755hypothetical protein
LOC_Os06g50630OsAffx.28200.1.S1_at10/116+30644087..30651386expressed protein
LOC_Os06g50639OsAffx.16009.1.S1_at9/116+30654893..30656964hypothetical protein
LOC_Os06g50639OsAffx.16010.1.S1_at7/116+30654893..30656964hypothetical protein
LOC_Os06g50650OsAffx.16008.1.S1_at11/116+30657582..30658169Plastocyanin-like domain containing protein
LOC_Os06g50659NANA6+30663228..30663914hypothetical protein
LOC_Os06g50670Os.8311.1.S1_a_at3/116+30665883..30667360expressed protein
LOC_Os06g50679Os.46441.1.S1_at11/116+30669940..30671514hypothetical protein
LOC_Os06g50679OsAffx.5159.1.S1_at1/116+30669940..30671514hypothetical protein
LOC_Os06g50688NANA6+30671792..30675336hypothetical protein
LOC_Os06g50697NANA6+30679329..30679929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50706Os.8311.1.S1_a_at11/116+30681418..30683899expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009856biological_processpollination
GO:0048653biological_processanther development
GO:0031225cellular_componentanchored to membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16008.1.S1_at--117--4492Chr06:30527248..30527359 (25 bp)
GCCGGCGACATCCTAGTGTTCCAGT
LOC_Os06g50420
OsAffx.16008.1.S1_at--526--5652Chr06:30527254..30527365 (25 bp)
GACATCCTAGTGTTCCAGTACGTGA
LOC_Os06g50420
OsAffx.16008.1.S1_at--790--6692Chr06:30527352..30527376 (25 bp)
GTTCCAGTACGTGAGGAGCCAGCAC
LOC_Os06g50420
OsAffx.16008.1.S1_at--551--1912Chr06:30527360..30527384 (25 bp)
ACGTGAGGAGCCAGCACAACGTGCT
LOC_Os06g50420
OsAffx.16008.1.S1_at--859--1492Chr06:30527372..30527396 (25 bp)
AGCACAACGTGCTCCAGGTGACGGA
LOC_Os06g50420
OsAffx.16008.1.S1_at--718--3952Chr06:30527393..30527417 (25 bp)
CGGAGGCCACCTACCGGTCGTGCGA
LOC_Os06g50420
OsAffx.16008.1.S1_at--1090--7232Chr06:30527434..30527458 (25 bp)
GTCGCCGGCGTGATCAAGAGCTACG
LOC_Os06g50420
OsAffx.16008.1.S1_at--795--4652Chr06:30527441..30527465 (25 bp)
GCGTGATCAAGAGCTACGACACCGG
LOC_Os06g50420
OsAffx.16008.1.S1_at--545--1772Chr06:30527461..30527485 (25 bp)
ACCGGCTACGACAGGGTGCAGCTCA
LOC_Os06g50420
OsAffx.16008.1.S1_at--696--4832Chr06:30527465..30527489 (25 bp)
GCTACGACAGGGTGCAGCTCACGGA
LOC_Os06g50420
OsAffx.16008.1.S1_at--931--692Chr06:30527545..30527569 (25 bp)
ATGAGGCTCGCCGTCAAAGTCGCCG
LOC_Os06g50420
Target Sequence 
GCCGGCGACATCCTAGTGTTCCAGTACGTGAGGAGCCAGCACAACGTGCTCCAGGTGACGGAGGCCACCTACCGGTCGTG
CGACACCGGCGGCGGCGGCGTCGCCGGCGTGATCAAGAGCTACGACACCGGCTACGACAGGGTGCAGCTCACGGAGCCCA
ACGCCACCTACTGGTTCATCTGCGACTTCCCCGGCCACTGCCTCGGAGGGATGAGGCTCGCCGTCAAAGTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis