Browse Element(s) Details


Os.8311.1.S1_a_at

Description gb:AK060956.1
DB_XREF= gi:32970974
TID=Os.8311.1
CNT=49
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.8311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G10, full insert sequence.
FL= gb:AK099272.1 gb:AK060956.1 gb:AK104784.1 gb:AK099620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5053911/11expressed protein
LOC_Os06g5058011/11expressed protein
LOC_Os06g5070611/11expressed protein
LOC_Os06g5049011/11expressed protein
LOC_Os06g508183/11hypothetical protein
LOC_Os06g506703/11expressed protein
LOC_Os06g507423/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50510OsAffx.5159.1.S1_at11/116+30573839..30582597START domain containing protein
LOC_Os06g50510Os.46441.1.S1_at6/116+30573839..30582597START domain containing protein
LOC_Os06g50520Os.52703.3.S1_x_at11/116+30588194..30592000expressed protein
LOC_Os06g50530OsAffx.27060.1.S1_at11/116+30596594..30597039hypothetical protein
LOC_Os06g50530OsAffx.2412.1.S1_x_at1/116+30596594..30597039hypothetical protein
LOC_Os06g50530OsAffx.2412.1.S1_at1/116+30596594..30597039hypothetical protein
LOC_Os06g50539Os.8311.1.S1_a_at11/116+30599232..30601792expressed protein
LOC_Os06g50548Os.46441.1.S1_at11/116+30603294..30604868hypothetical protein
LOC_Os06g50548OsAffx.5159.1.S1_at1/116+30603294..30604868hypothetical protein
LOC_Os06g50560NANA6+30605146..30611938START domain containing protein
LOC_Os06g50569OsAffx.27060.1.S1_at11/116+30612988..30613434hypothetical protein
LOC_Os06g50569OsAffx.2412.1.S1_x_at1/116+30612988..30613434hypothetical protein
LOC_Os06g50569OsAffx.2412.1.S1_at1/116+30612988..30613434hypothetical protein
LOC_Os06g50580Os.8311.1.S1_a_at11/116+30615722..30618244expressed protein
LOC_Os06g50590NANA6+30618789..30619222hypothetical protein
LOC_Os06g50600NANA6+30620288..30623098bZIP transcription factor family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8311.1.S1_a_at--890--10777Chr06:30751476..30751500 (25 bp)
TTGTTTACCTCTTGGGCAACGCTGC
LOC_Os06g50818
Os.8311.1.S1_a_at--1025--2997Chr06:30751525..30751549 (25 bp)
AATGATGGTCGCTGTTGACGTCAGG
LOC_Os06g50818
Os.8311.1.S1_a_at--110--6137Chr06:30751566..30751590 (25 bp)
GAGTGGCCAAGCTTGACCCCGAAAA
LOC_Os06g50818
Os.8311.1.S1_a_at--459--1418Chr06:30752353..30752377 (25 bp)
AGACACAAGAGTTGGACGACCTGAG
NONE
Os.8311.1.S1_a_at--983--4398Chr06:30752393..30752417 (25 bp)
GCCGAGTAGAATGTGCGAACCCAGT
NONE
Os.8311.1.S1_a_at--425--4599Chr06:30752407..30752431 (25 bp)
GCGAACCCAGTGACATATATGCATC
NONE
Os.8311.1.S1_a_at--499--10179Chr06:30752422..30752446 (25 bp)
TATATGCATCATACTGCAGCCTGCC
NONE
Os.8311.1.S1_a_at--844--5079Chr06:30752437..30752461 (25 bp)
GCAGCCTGCCTGGATGCAAATATTA
NONE
Os.8311.1.S1_a_at--368--10157Chr06:30752460..30752484 (25 bp)
TATCGTATCAGTGGTTTGTTGGCTT
NONE
Os.8311.1.S1_a_at--524--5257Chr06:30752538..30752562 (25 bp)
GAATCTTATCCAGGTTGCTTACTTT
NONE
Os.8311.1.S1_a_at--3--8838Chr06:30752631..30752655 (25 bp)
TGTTGGCTTATTTATGTGGCACTAA
NONE
Target Sequence 
TTGTTTACCTCTTGGGCAACGCTGCTGGCAGGGGTGCTAAGACGGGAGGAATGATGGTCGCTGTTGACGTCAGGAACAAG
GAGCTGCGAGGAGTGGCCAAGCTTGACCCCGAAAAGAACACCCTCTACTCCATGCGATGCTACCTTGCAACTGGGATCTC
CAAACGCCTCAACACTACCACAGACACAAGAGTTGGACGACCTGAGGAGGATGCAGAAGCCGCCGAGTAGAATGTGCGAA
CCCAGTGACATATATGCATCATACTGCAGCCTGCCTGGATGCAAATATTATCGTATCAGTGGTTTGTTGGCTTGAATGGG
GGTTAAGGAGTTGTGCTGTTGCTGGGCATATATAGTTTTGTGACAAGAATCTTATCCAGGTTGCTTACTTTGGGTTGATG
ATAAAAGTAGGAGTAGACGTGAATAACATTAATATATGTTGGCTTATTTTTTGAGGGGATGTTGGCTTATTTATGTGGCA
CTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8311.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis