Browse Element(s) Details


Os.52703.3.S1_x_at

Description gb:AK105741.1
DB_XREF= gi:32990950
TID=Os.52703.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-A08, full insert sequence.
FL= gb:AK105741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5052011/11expressed protein
LOC_Os12g411901/11tetratricopeptide repeat protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50480NANA6+30563133..30566038bZIP transcription factor family protein
LOC_Os06g50490Os.8311.1.S1_a_at11/116+30567537..30570099expressed protein
LOC_Os06g50499OsAffx.27060.1.S1_at11/116+30572343..30572789hypothetical protein
LOC_Os06g50499OsAffx.2412.1.S1_at2/116+30572343..30572789hypothetical protein
LOC_Os06g50499OsAffx.2412.1.S1_x_at2/116+30572343..30572789hypothetical protein
LOC_Os06g50510OsAffx.5159.1.S1_at11/116+30573839..30582597START domain containing protein
LOC_Os06g50510Os.46441.1.S1_at6/116+30573839..30582597START domain containing protein
LOC_Os06g50520Os.52703.3.S1_x_at11/116+30588194..30592000expressed protein
LOC_Os06g50530OsAffx.27060.1.S1_at11/116+30596594..30597039hypothetical protein
LOC_Os06g50530OsAffx.2412.1.S1_x_at1/116+30596594..30597039hypothetical protein
LOC_Os06g50530OsAffx.2412.1.S1_at1/116+30596594..30597039hypothetical protein
LOC_Os06g50539Os.8311.1.S1_a_at11/116+30599232..30601792expressed protein
LOC_Os06g50548Os.46441.1.S1_at11/116+30603294..30604868hypothetical protein
LOC_Os06g50548OsAffx.5159.1.S1_at1/116+30603294..30604868hypothetical protein
LOC_Os06g50560NANA6+30605146..30611938START domain containing protein
LOC_Os06g50569OsAffx.27060.1.S1_at11/116+30612988..30613434hypothetical protein
LOC_Os06g50569OsAffx.2412.1.S1_x_at1/116+30612988..30613434hypothetical protein
LOC_Os06g50569OsAffx.2412.1.S1_at1/116+30612988..30613434hypothetical protein
LOC_Os06g50580Os.8311.1.S1_a_at11/116+30615722..30618244expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52703.3.S1_x_at--962--6611Chr06:30591184..30591208 (25 bp)
GTTGGAGCTCGAGAACAATCCGTCA
LOC_Os06g50520
Os.52703.3.S1_x_at--948--1411Chr06:30591208..30591232 (25 bp)
AGAAATCCGATGCTCGCTGCGGGTA
LOC_Os06g50520
Os.52703.3.S1_x_at--149--2591Chr06:30591264..30591288 (25 bp)
AACGTGGTGTCACGACTACCAGCTG
LOC_Os06g50520
Os.52703.3.S1_x_at--661--9971Chr06:30591280..30591304 (25 bp)
TACCAGCTGGCCTGCAAAATTTGCA
LOC_Os06g50520
Os.52703.3.S1_x_at--223--5451Chr06:30591308..30591332 (25 bp)
GAACGTACTACTTGCCTATAGATGA
LOC_Os06g50520
Os.52703.3.S1_x_at--326--2895Chr06:30689891..30689915 (25 bp)
AAGGGTGCCCTTTATACCGATCAAG
NONE
Os.52703.3.S1_x_at--292--2355Chr06:30689955..30689979 (25 bp)
AAAGCAGGCTACTCGTCAACACTGT
NONE
Os.52703.3.S1_x_at--1120--1995Chr06:30689983..30690007 (25 bp)
ACTCCCTCTCAGTGATATGTGTTCA
NONE
Os.52703.3.S1_x_at--599--10116Chr06:30689998..30690022 (25 bp)
TATGTGTTCATGTCTATTCGGCCAG
NONE
Os.52703.3.S1_x_at--873--10215Chr06:30690012..30690036 (25 bp)
TATTCGGCCAGCAAGCACATTGCGT
NONE
Os.52703.3.S1_x_at--1081--9135Chr06:30690032..30690056 (25 bp)
TGCGTTCGTCAATACATGCTGTCAC
NONE
Target Sequence 
GTTGGAGCTCGAGAACAATCCGTCAGAAATCCGATGCTCGCTGCGGGTATCGTACACCAGCCTACACCAGCTCGCCGGGG
AACGTGGTGTCACGACTACCAGCTGGCCTGCAAAATTTGCACATGAACGTACTACTTGCCTATAGATGATGGTGGTGTGG
CCGTGTGGGCAATATTGGGTGCATATGAAATGCTGCAAGAAAAAAAAAGGGTGCCCTTTATACCGATCAAGAAAAAGAAG
TGCATTTTAGCTTGATCAAGAACTAACCCAAAAGCAGGCTACTCGTCAACACTGTTTCACTCCCTCTCAGTGATATGTGT
TCATGTCTATTCGGCCAGCAAGCACATTGCGTTCGTCAATACATGCTGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52703.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis