Browse Element(s) Details


OsAffx.5159.1.S1_at

Description tigr:9634.m04937
TID=OsAffx.5159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=START domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5051011/11START domain containing protein
LOC_Os06g505481/11hypothetical protein
LOC_Os06g506791/11hypothetical protein
LOC_Os06g507151/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50450OsAffx.28200.1.S1_at9/116+30541969..30549641expressed protein
LOC_Os06g50460OsAffx.16011.1.S1_at8/116+30554603..30556080hypothetical protein
LOC_Os06g50470NANA6+30558814..30559604hypothetical protein
LOC_Os06g50480NANA6+30563133..30566038bZIP transcription factor family protein
LOC_Os06g50490Os.8311.1.S1_a_at11/116+30567537..30570099expressed protein
LOC_Os06g50499OsAffx.27060.1.S1_at11/116+30572343..30572789hypothetical protein
LOC_Os06g50499OsAffx.2412.1.S1_at2/116+30572343..30572789hypothetical protein
LOC_Os06g50499OsAffx.2412.1.S1_x_at2/116+30572343..30572789hypothetical protein
LOC_Os06g50510OsAffx.5159.1.S1_at11/116+30573839..30582597START domain containing protein
LOC_Os06g50510Os.46441.1.S1_at6/116+30573839..30582597START domain containing protein
LOC_Os06g50520Os.52703.3.S1_x_at11/116+30588194..30592000expressed protein
LOC_Os06g50530OsAffx.27060.1.S1_at11/116+30596594..30597039hypothetical protein
LOC_Os06g50530OsAffx.2412.1.S1_x_at1/116+30596594..30597039hypothetical protein
LOC_Os06g50530OsAffx.2412.1.S1_at1/116+30596594..30597039hypothetical protein
LOC_Os06g50539Os.8311.1.S1_a_at11/116+30599232..30601792expressed protein
LOC_Os06g50548Os.46441.1.S1_at11/116+30603294..30604868hypothetical protein
LOC_Os06g50548OsAffx.5159.1.S1_at1/116+30603294..30604868hypothetical protein
LOC_Os06g50560NANA6+30605146..30611938START domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0009733biological_processresponse to auxin stimulus
GO:0009855biological_processdetermination of bilateral symmetry
GO:0009887biological_processorgan morphogenesis
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009955biological_processadaxial/abaxial pattern formation
GO:0009956biological_processradial pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010014biological_processmeristem initiation
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010073biological_processmeristem maintenance
GO:0010075biological_processregulation of meristem size
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0010089biological_processxylem histogenesis
GO:0030154biological_processcell differentiation
GO:0045597biological_processpositive regulation of cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5159.1.S1_at--618--4691Chr06:30580816..30580840 (25 bp)
GCGGCATCAATTGCAGCGGCTGTGC
LOC_Os06g50510
OsAffx.5159.1.S1_at--722--4414Chr06:30581064..30581224 (25 bp)
GCCAGAGCTATAGATGCCAACAGCA
LOC_Os06g50510
OsAffx.5159.1.S1_at--626--6231Chr06:30581748..30582108 (25 bp)
GATGGCGGAGGAGTAATATCCTTCT
LOC_Os06g50510
OsAffx.5159.1.S1_at--921--6171Chr06:30582095..30582115 (21 bp)
GAGGAGTAATATCCTTCTACTTTTC
LOC_Os06g50510
OsAffx.5159.1.S1_at--617--611Chr06:30582475..30582499 (25 bp)
ATGCGGAATGTATCCACAGACTATG
LOC_Os06g50510
OsAffx.5159.1.S1_at--1130--6891Chr06:30582484..30582508 (25 bp)
GTATCCACAGACTATGGGAGCCTGA
LOC_Os06g50510
OsAffx.5159.1.S1_at--75--3431Chr06:30582491..30582515 (25 bp)
CAGACTATGGGAGCCTGAGCATTTT
LOC_Os06g50510
OsAffx.5159.1.S1_at--1008--5851Chr06:30582501..30582525 (25 bp)
GAGCCTGAGCATTTTTGTCTTTCCA
LOC_Os06g50510
OsAffx.5159.1.S1_at--680--10351Chr06:30582512..30582536 (25 bp)
TTTTTGTCTTTCCAAGAATCGACCT
LOC_Os06g50510
OsAffx.5159.1.S1_at--770--5251Chr06:30582527..30582551 (25 bp)
GAATCGACCTATACTCTATTGAATA
LOC_Os06g50510
OsAffx.5159.1.S1_at--481--9891Chr06:30582538..30582562 (25 bp)
TACTCTATTGAATATGGCCTTTTAG
LOC_Os06g50510
Target Sequence 
GCGGCATCAATTGCAGCGGCTGTGCTGCTGCGGCGAGCTCCAAGGCGGTGATGACGATCGCATTCCAGTTCGTGTTCGAG
AGCCACCTGCAGGGCAGCGTGCCCGCCATGGCGCAGCAGTACATGTGCAGCATCATCTCATCGGTGCAGAGGATTGCCGT
GGTGCTCTCATCCTCCCGCCTCGTCCCTCCCGGCGTTGCCGCCGCCACGCAGCACGCGCCGGCGACTCGGTGCTGCCCAG
ATGGATTTGCCAGAGCTATAGATGCCAACAGCAGCAGTGAATCGGTTCTGAAAGCAGTTTGGCATCATCCCAGTGCCATA
CTCTACTGCTCTCTCAAGGTGATGCCAGTGTTCACGTTTGCAAACCGAAGACGGAGGCGGCGCCAGGCACAAGATGGCGG
AGGAGTAATATCCTTCTACTTTTCAACTTATCTTCATTCTCACAGAAACATTCCAGGATATTCAAAGATGCGGAATGTAT
CCACAGACTATGGGAGCCTGAGCATTTTTGTCTTTCCAAGAATCGACCTATACTCTATTGAATATGGCCTTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis