Browse Element(s) Details


OsAffx.16010.1.S1_at

Description tigr:9634.m04930
TID=OsAffx.16010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5044011/11hypothetical protein
LOC_Os06g507897/11hypothetical protein
LOC_Os06g506397/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50390Os.27255.2.S1_x_at11/116+30508420..30511305Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g50400Os.22908.1.S1_at11/116+30519197..30520347Alpha-expansin 11 precursor, putative, expressed
LOC_Os06g50410NANA6+30520810..30522036hypothetical protein
LOC_Os06g50420OsAffx.16008.1.S1_at11/116+30527098..30527733Plastocyanin-like domain containing protein
LOC_Os06g50430OsAffx.16009.1.S1_at11/116+30528301..30529521hypothetical protein
LOC_Os06g50440OsAffx.16010.1.S1_at11/116+30536134..30537527hypothetical protein
LOC_Os06g50450OsAffx.28200.1.S1_at9/116+30541969..30549641expressed protein
LOC_Os06g50460OsAffx.16011.1.S1_at8/116+30554603..30556080hypothetical protein
LOC_Os06g50470NANA6+30558814..30559604hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16010.1.S1_at--1130--5393Chr06:30536197..30536221 (25 bp)
GAAGCCAAAGGGTCCAGCTTGTCCC
LOC_Os06g50440
OsAffx.16010.1.S1_at--246--1553Chr06:30536212..30536236 (25 bp)
AGCTTGTCCCTAGGATGCCTGGCTA
LOC_Os06g50440
OsAffx.16010.1.S1_at--498--10093Chr06:30536222..30536246 (25 bp)
TAGGATGCCTGGCTATGTCTTACCC
LOC_Os06g50440
OsAffx.16010.1.S1_at--806--8493Chr06:30536231..30536255 (25 bp)
TGGCTATGTCTTACCCCGCCTTGAG
LOC_Os06g50440
OsAffx.16010.1.S1_at--945--4191Chr06:30536245..30536269 (25 bp)
CCCGCCTTGAGCATCGACGACGATG
LOC_Os06g50440
OsAffx.16010.1.S1_at--287--6833Chr06:30536275..30536299 (25 bp)
GTTTACCTCTTGTGCAATTCTGCCA
LOC_Os06g50440
OsAffx.16010.1.S1_at--214--7353Chr06:30536286..30536310 (25 bp)
GTGCAATTCTGCCAACAGGGATTGT
LOC_Os06g50440
OsAffx.16010.1.S1_at--98--8873Chr06:30536324..30536348 (25 bp)
TGATGATCGCCCTTGATGTCAGGAA
LOC_Os06g50440
OsAffx.16010.1.S1_at--721--5511Chr06:30536381..30536405 (25 bp)
GAAAAAAGAACACCCTCTTCTCCAT
LOC_Os06g50440
OsAffx.16010.1.S1_at--557--1811Chr06:30536392..30536416 (25 bp)
ACCCTCTTCTCCATGAGATGCTATC
LOC_Os06g50440
OsAffx.16010.1.S1_at--1058--8891Chr06:30536405..30536429 (25 bp)
TGAGATGCTATCTCGCAACTGCCAT
LOC_Os06g50440
Target Sequence 
GAAGCCAAAGGGTCCAGCTTGTCCCTAGGATGCCTGGCTATGTCTTACCCCGCCTTGAGCATCGACGACGATGATGTTGT
TTACCTCTTGTGCAATTCTGCCAACAGGGATTGTGATATGGGAGGAGTGATGATCGCCCTTGATGTCAGGAAGAAGGAGA
TTCAAGGAGCGGCCAAGCTTGACGGAAAAAAGAACACCCTCTTCTCCATGAGATGCTATCTCGCAACTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis