Browse Element(s) Details

Os.49289.1.S1_at

Description

gb:AK120680.1
DB_XREF= gi:37990303
TID=Os.49289.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162K23, full insert sequence.
FL= gb:AK120680.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21270	11/11	Glycine rich protein family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21230	Os.49281.1.S1_s_at	1/11	6	+	12272482..12273085	Glycine rich protein family protein
LOC_Os06g21240	Os.49281.1.S1_at	11/11	6	+	12278982..12280402	Glycine rich protein family protein, expressed
LOC_Os06g21240	Os.49281.1.S1_s_at	11/11	6	+	12278982..12280402	Glycine rich protein family protein, expressed
LOC_Os06g21240	Os.10370.1.S1_x_at	1/11	6	+	12278982..12280402	Glycine rich protein family protein, expressed
LOC_Os06g21250	OsAffx.27747.1.S1_at	11/11	6	+	12286613..12287832	Glycine rich protein family protein, expressed
LOC_Os06g21260	OsAffx.25574.2.S1_x_at	1/11	6	+	12291025..12295851	retrotransposon protein, putative, unclassified
LOC_Os06g21260	Os.27255.2.S1_x_at	1/11	6	+	12291025..12295851	retrotransposon protein, putative, unclassified
LOC_Os06g21270	Os.49289.1.S1_x_at	11/11	6	+	12297047..12297983	Glycine rich protein family protein, expressed
LOC_Os06g21270	Os.49289.1.S1_at	11/11	6	+	12297047..12297983	Glycine rich protein family protein, expressed
LOC_Os06g21280	Os.26886.1.S1_x_at	9/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21280	Os.26886.3.S1_x_at	5/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21280	OsAffx.16244.1.S1_x_at	1/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21290	NA	NA	6	+	12306265..12306810	hypothetical protein
LOC_Os06g21300	OsAffx.16467.1.S1_at	6/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21300	Os.26886.2.S1_s_at	6/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21300	Os.26886.6.S1_s_at	4/11	6	+	12307337..12310430	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21310	OsAffx.15535.1.S1_at	10/11	6	+	12311355..12312371	Glycine rich protein family protein
LOC_Os06g21320	OsAffx.27749.1.S1_at	11/11	6	+	12313292..12313507	hypothetical protein
LOC_Os06g21330	Os.54837.1.S1_at	11/11	6	+	12317392..12320914	ankyrin repeat family protein, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_x_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_x_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0003723	molecular_function	RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49289.1.S1_at--86--849	1	Chr06:12297630..12297654 (25 bp)	TGGCGGATACGGAGGATACAACAAA	LOC_Os06g21270
Os.49289.1.S1_at--850--793	1	Chr06:12297643..12297667 (25 bp)	GGATACAACAAAGGATACGGTGGTG	LOC_Os06g21270
Os.49289.1.S1_at--354--861	1	Chr06:12297675..12297699 (25 bp)	TGGTGGATACAGTAAAGGCTTTGGA	LOC_Os06g21270
Os.49289.1.S1_at--795--517	1	Chr06:12297775..12297799 (25 bp)	GCAAGACTACATCCAGAGAATACTA	LOC_Os06g21270
Os.49289.1.S1_at--440--571	1	Chr06:12297779..12297803 (25 bp)	GACTACATCCAGAGAATACTATTTA	LOC_Os06g21270
Os.49289.1.S1_at--220--309	1	Chr06:12297813..12297837 (25 bp)	AATAAGACTTATTTCTTTCTTATGT	LOC_Os06g21270
Os.49289.1.S1_at--908--69	1	Chr06:12297867..12297891 (25 bp)	ATGAGCTCGATTTTATATGGTTTTA	LOC_Os06g21270
Os.49289.1.S1_at--502--749	1	Chr06:12297906..12297930 (25 bp)	GTGGTGAATTAAACAAATTTCTTCT	LOC_Os06g21270
Os.49289.1.S1_at--532--225	1	Chr06:12297920..12297944 (25 bp)	AAATTTCTTCTTATACCTTGTATGA	LOC_Os06g21270
Os.49289.1.S1_at--246--957	1	Chr06:12297925..12297949 (25 bp)	TCTTCTTATACCTTGTATGATCAAA	LOC_Os06g21270
Os.49289.1.S1_at--83--67	1	Chr06:12297955..12297979 (25 bp)	ATGAATGGCCCATTTTATTTCACTA	LOC_Os06g21270

Target Sequence

TGGCGGATACGGAGGATACAACAAAGGATACGGTGGTGGCGGTGGTGGTGGATACAGTAAAGGCTTTGGAGGAGGATATG
GCGGTGGTGGCTATCCTGGTGGTGGATACTACGGTGGNGNTGGNGGTGGCGGATGGCACTAAGAAGCAAGACTACATCCA
GAGAATACTATTTATGAGAAGAAAATAAGACTTATTTCTTTCTTATGTTTCTATTAAAACATGTCATTATTTAAAAAATG
AGCTCGATTTTATATGGTTTTATCTAGATGTTTGTTGTGGTGAATTAAACAAATTTCTTCTTATACCTTGTATGATCAAA
TATTAATGAATGGCCCATTTTATTTCACTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis