Browse Element(s) Details

Os.10370.1.S1_x_at

Description

gb:AK062370.1
DB_XREF= gi:32972388
TID=Os.10370.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A04, full insert sequence.
FL= gb:AK062370.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21210	10/11	Glycine rich protein family protein, expressed
LOC_Os06g21240	1/11	Glycine rich protein family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21170	OsAffx.30226.4.S1_at	4/11	6	+	12232995..12235340	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21170	OsAffx.30226.4.S1_x_at	2/11	6	+	12232995..12235340	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21170	OsAffx.30226.1.S1_x_at	1/11	6	+	12232995..12235340	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21170	OsAffx.24587.1.S1_x_at	1/11	6	+	12232995..12235340	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21180	NA	NA	6	+	12236621..12242813	retrotransposon protein, putative, unclassified
LOC_Os06g21190	NA	NA	6	+	12243414..12246474	retrotransposon protein, putative, unclassified
LOC_Os06g21200	OsAffx.442.1.S1_x_at	5/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200	OsAffx.30226.2.S1_s_at	4/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200	OsAffx.30226.2.S1_x_at	3/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200	OsAffx.442.1.S1_at	3/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200	OsAffx.24587.1.S1_x_at	1/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200	Os.51982.1.S1_at	1/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21210	Os.10370.1.S1_at	11/11	6	+	12251283..12252366	Glycine rich protein family protein, expressed
LOC_Os06g21210	Os.10370.1.S1_x_at	10/11	6	+	12251283..12252366	Glycine rich protein family protein, expressed
LOC_Os06g21220	NA	NA	6	+	12260391..12261979	Glycine rich protein family protein
LOC_Os06g21230	Os.49281.1.S1_s_at	1/11	6	+	12272482..12273085	Glycine rich protein family protein

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Gene Ontology Classification

GO id	Type	Name
GO:0003723	molecular_function	RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10370.1.S1_x_at--594--857	1	Chr06:12251829..12251853 (25 bp)	TGGATACTACCCTGGTGGAGGATAT	LOC_Os06g21210
Os.10370.1.S1_x_at--428--371	1	Chr06:12251823..12251847 (25 bp)	CTACCCTGGTGGAGGATATGGATAT	LOC_Os06g21210
Os.10370.1.S1_x_at--1118--145	1	Chr06:12251781..12251805 (25 bp)	AGAATATGGTCGTCCTGGGTACGGT	LOC_Os06g21210
Os.10370.1.S1_x_at--1151--99	2	Chr06:12279960..12279984 (25 bp)	AGGATATGGTCATCCTGGGTATGGT	LOC_Os06g21240
Os.10370.1.S1_x_at--485--951	1	Chr06:12251350..12251374 (25 bp)	TCTCGTCCTTCTTTCATGAACAGTT	LOC_Os06g21210
Os.10370.1.S1_x_at--324--727	1	Chr06:12251346..12251370 (25 bp)	GTCCTTCTTTCATGAACAGTTCTTT	LOC_Os06g21210
Os.10370.1.S1_x_at--242--353	1	Chr06:12251336..12251360 (25 bp)	CATGAACAGTTCTTTCTCTCGTTGA	LOC_Os06g21210
Os.10370.1.S1_x_at--398--249	1	Chr06:12251332..12251356 (25 bp)	AACAGTTCTTTCTCTCGTTGATGTA	LOC_Os06g21210
Os.10370.1.S1_x_at--362--123	1	Chr06:12251329..12251353 (25 bp)	AGTTCTTTCTCTCGTTGATGTAAAA	LOC_Os06g21210
Os.10370.1.S1_x_at--720--547	1	Chr06:12251303..12251327 (25 bp)	GAACATTTCTTTCTTAATACTTCCA	LOC_Os06g21210
Os.10370.1.S1_x_at--873--1067	1	Chr06:12251283..12251307 (25 bp)	TTCCAAAGAGAAATCTATCGATCCT	NONE

Target Sequence

TGGATACTACCCTGGTGGAGGATATGGATATGGTGGTGGGTACGGTGGAGAATATGGTCGTCCTGGGTACGGTGGTGGGT
ACGGTGGAGGATATGGTCATCCTGGGTATGGTGGTGGCTACGGCGGTGGATATGGACGTGGGTATGGTGGCGGGTACGGT
GGTTCGGGTGGAGGATATGGCGGTGGATACGGAGGTGGATACGGAGGTGGATACGGTGGTGGTGGGGGTTACGGTGGAGG
ATATGGTGGTGGTGGTTGGTACTAAGAAGCAGTTGAATGGTACATAATATGCATGTTTGTGTGTNCTAAATAAGTCATGT
ATGACAGATTTNCTTGAACATGTAATTNCTTCAATGTAATTNCTTCAATGGTGGTGTAGTAGTNAGAGCTTTGAAGACCC
ACCTTTGTTTGGTATTTATGTTTCATGCATGTATTTTAGAATCTAGTATTGTAATATGGCATGTTTGAAAGTAATTAAAN
TCTCGTCCTTCTTTCATGAACAGTTCTTTCTCTCGTTGATGTAAAAGGAACATTTCTTTCTTAATACTTCCAAAGAGAAA
TCTATCGATCCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis