Browse Element(s) Details


Os.10370.1.S1_at

Description gb:AK062370.1
DB_XREF= gi:32972388
TID=Os.10370.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A04, full insert sequence.
FL= gb:AK062370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2121011/11Glycine rich protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21170OsAffx.30226.4.S1_at4/116+12232995..12235340retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21170OsAffx.30226.4.S1_x_at2/116+12232995..12235340retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21170OsAffx.30226.1.S1_x_at1/116+12232995..12235340retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21170OsAffx.24587.1.S1_x_at1/116+12232995..12235340retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21180NANA6+12236621..12242813retrotransposon protein, putative, unclassified
LOC_Os06g21190NANA6+12243414..12246474retrotransposon protein, putative, unclassified
LOC_Os06g21200OsAffx.442.1.S1_x_at5/116+12248345..12249953retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200OsAffx.30226.2.S1_s_at4/116+12248345..12249953retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200OsAffx.30226.2.S1_x_at3/116+12248345..12249953retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200OsAffx.442.1.S1_at3/116+12248345..12249953retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200OsAffx.24587.1.S1_x_at1/116+12248345..12249953retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200Os.51982.1.S1_at1/116+12248345..12249953retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21210Os.10370.1.S1_at11/116+12251283..12252366Glycine rich protein family protein, expressed
LOC_Os06g21210Os.10370.1.S1_x_at10/116+12251283..12252366Glycine rich protein family protein, expressed
LOC_Os06g21220NANA6+12260391..12261979Glycine rich protein family protein
LOC_Os06g21230Os.49281.1.S1_s_at1/116+12272482..12273085Glycine rich protein family protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10370.1.S1_at--486--9511Chr06:12251350..12251374 (25 bp)
TCTCGTCCTTCTTTCATGAACAGTT
LOC_Os06g21210
Os.10370.1.S1_at--1096--9391Chr06:12251348..12251372 (25 bp)
TCGTCCTTCTTTCATGAACAGTTCT
LOC_Os06g21210
Os.10370.1.S1_at--323--7271Chr06:12251346..12251370 (25 bp)
GTCCTTCTTTCATGAACAGTTCTTT
LOC_Os06g21210
Os.10370.1.S1_at--832--9611Chr06:12251337..12251361 (25 bp)
TCATGAACAGTTCTTTCTCTCGTTG
LOC_Os06g21210
Os.10370.1.S1_at--973--8971Chr06:12251334..12251358 (25 bp)
TGAACAGTTCTTTCTCTCGTTGATG
LOC_Os06g21210
Os.10370.1.S1_at--397--2491Chr06:12251332..12251356 (25 bp)
AACAGTTCTTTCTCTCGTTGATGTA
LOC_Os06g21210
Os.10370.1.S1_at--254--3451Chr06:12251330..12251354 (25 bp)
CAGTTCTTTCTCTCGTTGATGTAAA
LOC_Os06g21210
Os.10370.1.S1_at--629--6731Chr06:12251328..12251352 (25 bp)
GTTCTTTCTCTCGTTGATGTAAAAG
LOC_Os06g21210
Os.10370.1.S1_at--838--6271Chr06:12251313..12251337 (25 bp)
GATGTAAAAGGAACATTTCTTTCTT
LOC_Os06g21210
Os.10370.1.S1_at--721--5471Chr06:12251303..12251327 (25 bp)
GAACATTTCTTTCTTAATACTTCCA
LOC_Os06g21210
Os.10370.1.S1_at--933--10311Chr06:12251298..12251322 (25 bp)
TTTCTTTCTTAATACTTCCAAAGAG
LOC_Os06g21210
Target Sequence 
TCTCGTCCTTCTTTCATGAACAGTTCTTTCTCTCGTTGATGTAAAAGGAACATTTCTTTCTTAATACTTCCAAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis