Browse Element(s) Details

Os.51982.1.S1_at

Description

gb:AK064460.1
DB_XREF= gi:32974478
TID=Os.51982.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-G04, full insert sequence.
FL= gb:AK064460.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21200	1/11	retrotransposon protein, putative, Ty1-copia subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21160	NA	NA	6	+	12222083..12225387	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21170	OsAffx.30226.4.S1_at	4/11	6	+	12232995..12235340	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21170	OsAffx.30226.4.S1_x_at	2/11	6	+	12232995..12235340	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21170	OsAffx.30226.1.S1_x_at	1/11	6	+	12232995..12235340	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21170	OsAffx.24587.1.S1_x_at	1/11	6	+	12232995..12235340	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21180	NA	NA	6	+	12236621..12242813	retrotransposon protein, putative, unclassified
LOC_Os06g21190	NA	NA	6	+	12243414..12246474	retrotransposon protein, putative, unclassified
LOC_Os06g21200	OsAffx.442.1.S1_x_at	5/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200	OsAffx.30226.2.S1_s_at	4/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200	OsAffx.30226.2.S1_x_at	3/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200	OsAffx.442.1.S1_at	3/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200	OsAffx.24587.1.S1_x_at	1/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21200	Os.51982.1.S1_at	1/11	6	+	12248345..12249953	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21210	Os.10370.1.S1_at	11/11	6	+	12251283..12252366	Glycine rich protein family protein, expressed
LOC_Os06g21210	Os.10370.1.S1_x_at	10/11	6	+	12251283..12252366	Glycine rich protein family protein, expressed
LOC_Os06g21220	NA	NA	6	+	12260391..12261979	Glycine rich protein family protein
LOC_Os06g21230	Os.49281.1.S1_s_at	1/11	6	+	12272482..12273085	Glycine rich protein family protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51982.1.S1_at--189--79	1	Chr01:4665117..4665141 (25 bp)	ATGGTCCGGTCCACATGTGTGAGAA	NONE
Os.51982.1.S1_at--1063--669	1	Chr01:4665154..4665402 (25 bp)	GTTCCTCCGGCCAATTCAGGAAAAT	NONE
Os.51982.1.S1_at--102--1033	1	Chr01:4665404..4665428 (25 bp)	TTTCTTCTACTTAGCTTCATCTGGG	NONE
Os.51982.1.S1_at--144--1055	1	Chr01:4665419..4665443 (25 bp)	TTCATCTGGGCTTCATCCTTTTGGG	NONE
Os.51982.1.S1_at--172--761	1	Chr01:4665442..4665466 (25 bp)	GGGCAATCTCTGTTTGAGCCAGCAT	NONE
Os.51982.1.S1_at--171--587	2	Chr06:12248393..12248459 (24 bp)	GAGCCAGCATCTCAGCTATGCATGG	LOC_Os06g21200
Os.51982.1.S1_at--571--1013	1	Chr01:4665473..4665497 (25 bp)	TATGCATGGGCCAGCAGCAGCTCAG	NONE
Os.51982.1.S1_at--411--507	1	Chr01:4665489..4665513 (25 bp)	GCAGCTCAGCATAAAATTGGTCCCT	NONE
Os.51982.1.S1_at--891--675	1	Chr01:4665537..4665561 (25 bp)	GTTAACCGGTTACTTGTCCAGCAGA	NONE
Os.51982.1.S1_at--350--859	1	Chr01:4665574..4665598 (25 bp)	TGGTTTGCCATCATGTCGAATGTAC	NONE
Os.51982.1.S1_at--622--721	1	Chr01:4665588..4665612 (25 bp)	GTCGAATGTACTTCTGGTTCTTAAA	NONE

Target Sequence

ATGGTCCGGTCCACATGTGTGAGAAGGGAAGCTCCACGTTCCTCCGGCCAATTCAGGAAAATATTTCTTCTACTTAGCTT
CATCTGGGCTTCATCCTTTTGGGGCAATCTCTGTTTGAGCCAGCATCTCAGCTATGCATGGGCCAGCAGCAGCTCAGCAT
AAAATTGGTCCCTGAAAAGTGTAAAAGTTACAAGTGGTTAACCGGTTACTTGTCCAGCAGAAATGGTTTGGTTTGGTTTG
CCATCATGTCGAATGTACTTCTGGTTCTTAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis