Browse Element(s) Details

Os.4620.1.S1_at

Description

gb:AU077727
DB_XREF= gi:5667485
DB_XREF=AU077727
CLONE=E61035_2Z
TID=Os.4620.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.4620 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21369	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21320	OsAffx.27749.1.S1_at	11/11	6	+	12313292..12313507	hypothetical protein
LOC_Os06g21330	Os.54837.1.S1_at	11/11	6	+	12317392..12320914	ankyrin repeat family protein, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_x_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_x_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21350	OsAffx.27750.1.S1_x_at	4/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.36607.2.S1_x_at	3/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.46853.2.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21360	NA	NA	6	+	12332263..12336284	Sodium/hydrogen exchanger family protein
LOC_Os06g21369	Os.4620.1.S1_at	11/11	6	+	12337888..12340181	hypothetical protein
LOC_Os06g21380	Os.11946.1.S1_at	11/11	6	+	12344921..12349134	carboxyl-terminal protease family protein, expressed
LOC_Os06g21390	Os.26343.1.S1_at	11/11	6	+	12351357..12357104	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g21400	Os.5384.1.S1_at	9/11	6	+	12358337..12359021	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4620.1.S1_at--367--1035	1	Chr06:12338638..12338662 (25 bp)	TTTTTCTCCGGTGAAGATTCCCTAT	LOC_Os06g21369
Os.4620.1.S1_at--450--973	2	Chr06:12338614..12338638 (25 bp)	TCAATCATTTTCCAGGTTCACCATT	LOC_Os06g21369
Os.4620.1.S1_at--914--273	1	Chr06:12338553..12338577 (25 bp)	AAGAAGGTAGCGCTGGCCACTTGCT	LOC_Os06g21369
Os.4620.1.S1_at--459--393	1	Chr06:12338521..12338545 (25 bp)	CGGCGAGCTTTCTGCATCTATGTTG	LOC_Os06g21369
Os.4620.1.S1_at--801--713	1	Chr06:12338496..12338520 (25 bp)	GTCTTCTTACTCGTCTTTGGCGTTA	LOC_Os06g21369
Os.4620.1.S1_at--588--169	1	Chr06:12338366..12338390 (25 bp)	AGCCATGGATTATCAGCTCCTGTCG	LOC_Os06g21369
Os.4620.1.S1_at--189--641	1	Chr06:12338327..12338351 (25 bp)	GATCTGGCCTTCGTTGTTGTGGACA	LOC_Os06g21369
Os.4620.1.S1_at--727--529	6	Chr05:16011330..16011354 (25 bp)	GAAGGACCCGATTGCTTTTTCTGTT	NONE
Os.4620.1.S1_at--1102--101	1	Chr06:12338261..12338285 (25 bp)	AGGTCCTTCCTTGCATATTTCAGGG	LOC_Os06g21369
Os.4620.1.S1_at--921--769	1	Chr06:12338209..12338233 (25 bp)	GGGTCTCCCTGTAAGACTTGCTGTA	LOC_Os06g21369
Os.4620.1.S1_at--1067--1069	1	Chr06:12338192..12338216 (25 bp)	TTGCTGTACTCTCAACTTGCTTAAT	LOC_Os06g21369

Target Sequence

TTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCGAAGCTAAGAGCACGATGGGTTTG
CCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTT
GGCGTTAGCTTTACAAGCTAGCCATGGATTATCAGCTCCTGTCGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGG
ACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTAGGTCCTTCCTTGCATATTTCAGGGTTAAAATGTAA
TTTGGCCATCTGTCAGGGGTCTCCCTGTAAGACTTGCTGTACTCTCAACTTGCTTAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis