Browse Element(s) Details

Os.11946.1.S1_at

Description

gb:AK069141.1
DB_XREF= gi:32979165
TID=Os.11946.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008K20, full insert sequence.
FL= gb:AK069141.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21380	11/11	carboxyl-terminal protease family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21330	Os.54837.1.S1_at	11/11	6	+	12317392..12320914	ankyrin repeat family protein, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.1.S1_x_at	11/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_x_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21340	Os.23086.2.S1_at	10/11	6	+	12321893..12325084	Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os06g21350	OsAffx.27750.1.S1_x_at	4/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.36607.2.S1_x_at	3/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.46853.2.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21360	NA	NA	6	+	12332263..12336284	Sodium/hydrogen exchanger family protein
LOC_Os06g21369	Os.4620.1.S1_at	11/11	6	+	12337888..12340181	hypothetical protein
LOC_Os06g21380	Os.11946.1.S1_at	11/11	6	+	12344921..12349134	carboxyl-terminal protease family protein, expressed
LOC_Os06g21390	Os.26343.1.S1_at	11/11	6	+	12351357..12357104	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g21400	Os.5384.1.S1_at	9/11	6	+	12358337..12359021	hypothetical protein
LOC_Os06g21410	OsAffx.27752.1.S1_s_at	11/11	6	+	12365595..12367161	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0007242	biological_process	intracellular signaling cascade
GO:0005739	cellular_component	mitochondrion
GO:0009543	cellular_component	thylakoid lumen (sensu Viridiplantae)

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11946.1.S1_at--88--191	1	Chr06:12348536..12348560 (25 bp)	ACGGTCGCAAAATATCTCTCTCCAG	LOC_Os06g21380
Os.11946.1.S1_at--18--47	1	Chr06:12348549..12348573 (25 bp)	ATCTCTCTCCAGCACTGCATGAAAT	LOC_Os06g21380
Os.11946.1.S1_at--540--693	1	Chr06:12348581..12348605 (25 bp)	GTAGGCATCCAACCTGACATACAAT	LOC_Os06g21380
Os.11946.1.S1_at--377--61	1	Chr06:12348604..12348628 (25 bp)	ATGCACCCCTGAAATGTTATCTTTG	LOC_Os06g21380
Os.11946.1.S1_at--519--107	1	Chr06:12348729..12348753 (25 bp)	AGGGATCTGCTTCGTAGGTACTTCT	LOC_Os06g21380
Os.11946.1.S1_at--846--169	1	Chr06:12348757..12348781 (25 bp)	AGCCAGAATCCTTTGTATGTCCACA	LOC_Os06g21380
Os.11946.1.S1_at--750--661	1	Chr06:12348786..12348810 (25 bp)	GTTGGTCAGGTTCATAGTGGCATCT	LOC_Os06g21380
Os.11946.1.S1_at--247--559	1	Chr06:12348817..12348841 (25 bp)	GAAATTCAGCATAGCTCCATGTATA	LOC_Os06g21380
Os.11946.1.S1_at--726--559	1	Chr06:12348942..12348966 (25 bp)	GAAATTAGTTATCTCGTCTTCAGGG	LOC_Os06g21380
Os.11946.1.S1_at--978--755	1	Chr06:12348965..12348989 (25 bp)	GGGCCAAATGCCCTTGTCATTGATT	LOC_Os06g21380
Os.11946.1.S1_at--948--495	1	Chr06:12349035..12349059 (25 bp)	GCATATTGTCTACCAATGCCAGTAC	LOC_Os06g21380

Target Sequence

ACGGTCGCAAAATATCTCTCTCCAGCACTGCATGAAATCGACCAAGTAGGCATCCAACCTGACATACAATGCACCCCTGA
AATGTTATCTTTGCCAAGAGCACCTTCGCTAAAAGAGGACGACAAAGCCACAAATCTGGAGATGGATTCATGTATCATGG
TGGCAGAGCAAGCATTGGAAATTGAGAAATCAAAGGGATCTGCTTCGTAGGTACTTCTGTAAGCCAGAATCCTTTGTATG
TCCACATTTAGTTGGTCAGGTTCATAGTGGCATCTGCAGATGAAATTCAGCATAGCTCCATGTATAATATTGTAATCTAC
CGTAGGTTGTATAGTTAGTATAGGCTGTAATGATAATATATATAGGCTGATAACTGTGATGTTAGATTGTAGGCAAAGAA
GCACCAGAAATTAGTTATCTCGTCTTCAGGGGCCAAATGCCCTTGTCATTGATTCGAGATGTGTCAATAGGAATTTGTAA
TTGTCACTTGTTAATCATTGCATATTGTCTACCAATGCCAGTAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis