Browse Element(s) Details

OsAffx.27752.1.S1_s_at

Description

tigr:9634.m02096
TID=OsAffx.27752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21410	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21380	Os.11946.1.S1_at	11/11	6	+	12344921..12349134	carboxyl-terminal protease family protein, expressed
LOC_Os06g21390	Os.26343.1.S1_at	11/11	6	+	12351357..12357104	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g21400	Os.5384.1.S1_at	9/11	6	+	12358337..12359021	hypothetical protein
LOC_Os06g21410	OsAffx.27752.1.S1_s_at	11/11	6	+	12365595..12367161	expressed protein
LOC_Os06g21420	Os.40855.2.S1_x_at	10/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21420	Os.40855.4.S1_x_at	4/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21420	Os.40855.4.S1_at	1/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21420	Os.40360.1.S1_x_at	1/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21430	Os.40855.2.S1_x_at	9/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40360.1.S1_at	9/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40360.1.S1_x_at	6/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40855.5.S1_x_at	3/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40855.4.S1_x_at	2/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40855.4.S1_at	1/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21440	OsAffx.21161.1.S1_at	1/11	6	+	12391026..12395775	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane
GO:0031225	cellular_component	anchored to membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27752.1.S1_s_at--957--931	1	Chr06:12365755..12365779 (25 bp)	TCGCCTACTACCTACAGTAAGGAAG	LOC_Os06g21410
OsAffx.27752.1.S1_s_at--124--97	1	Chr06:12365823..12365847 (25 bp)	AGGAGAGGACATTTGGTTTGATATG	LOC_Os06g21410
OsAffx.27752.1.S1_s_at--267--939	1	Chr06:12365851..12365875 (25 bp)	TCGTTATCGTTCATGTTATAATTAA	LOC_Os06g21410
OsAffx.27752.1.S1_s_at--488--1049	1	Chr06:12365872..12365896 (25 bp)	TTAAGTGTCTAAATGTGGTTTTTGT	LOC_Os06g21410
OsAffx.27752.1.S1_s_at--252--653	1	Chr06:12365900..12365924 (25 bp)	GATTTGATTGACAATGTTGATCCAT	LOC_Os06g21410
OsAffx.27752.1.S1_s_at--332--665	1	Chr06:12365915..12365939 (25 bp)	GTTGATCCATTAGTCCATTCATTTA	LOC_Os06g21410
OsAffx.27752.1.S1_s_at--352--727	1	Chr06:12365927..12365951 (25 bp)	GTCCATTCATTTAATTTGCTCGCCT	LOC_Os06g21410
OsAffx.27752.1.S1_s_at--946--355	1	Chr06:12365934..12365958 (25 bp)	CATTTAATTTGCTCGCCTTTTCTTC	LOC_Os06g21410
OsAffx.27752.1.S1_s_at--574--1065	1	Chr06:12365956..12365980 (25 bp)	TTCCCCTCGTGTGTTCATTTGCTAA	LOC_Os06g21410
OsAffx.27752.1.S1_s_at--596--429	1	Chr06:12365960..12365984 (25 bp)	CCTCGTGTGTTCATTTGCTAATTAC	LOC_Os06g21410
OsAffx.27752.1.S1_s_at--59--743	1	Chr06:12365966..12365990 (25 bp)	GTGTTCATTTGCTAATTACATTTGT	LOC_Os06g21410

Target Sequence

TCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACAT
TTGGTTTGATATGTGTTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAAT
GTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis