Browse Element(s) Details


Os.7581.1.S1_at

Description gb:AY288198.2
DB_XREF= gi:31544933
GEN=RacGDI1
TID=Os.7581.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7581 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Rac GDP-dissociation inhibitor 1 (RacGDI1) mRNA, complete cds.
PROD=Rac GDP-dissociation inhibitor 1
FL= gb:AY288198.2 gb:AK073093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4873011/11RHO protein GDP dissociation inhibitor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48690OsAffx.3000.1.S1_at11/112+29799417..29802234expressed protein
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein
LOC_Os02g48710NANA2+29807417..29807626expressed protein
LOC_Os02g48720Os.9282.1.S1_at11/112+29816067..29819384ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g48730Os.7581.1.S1_at11/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48730Os.23086.1.S1_x_at1/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48730Os.23086.2.S1_x_at1/112+29821679..29824584RHO protein GDP dissociation inhibitor containing protein, expressed
LOC_Os02g48740Os.23544.1.S1_at11/112+29827488..29832167Fimbrin-like protein 2, putative, expressed
LOC_Os02g48750OsAffx.24789.1.S1_at11/112+29838720..29839364hypothetical protein
LOC_Os02g48760OsAffx.24790.1.S1_at11/112+29842034..29842519hypothetical protein
LOC_Os02g48770Os.11812.1.S1_at11/112+29844503..29846574SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os02g48780NANA2+29847702..29848589BAG domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005094molecular_functionRho GDP-dissociation inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7581.1.S1_at--1124--5771Chr02:29824067..29824091 (25 bp)
GACGACGACCGGAAATGTTACCTGG
LOC_Os02g48730
Os.7581.1.S1_at--835--9851Chr02:29824100..29824124 (25 bp)
TACACCTTCGACATACGCCGAGAGT
LOC_Os02g48730
Os.7581.1.S1_at--768--7531Chr02:29824123..29824147 (25 bp)
GTGGCCGGCGTTGAGCTAATGATCA
LOC_Os02g48730
Os.7581.1.S1_at--490--2991Chr02:29824140..29824164 (25 bp)
AATGATCAGCTGAGCCGTTTTTCCG
LOC_Os02g48730
Os.7581.1.S1_at--1138--10531Chr02:29824209..29824233 (25 bp)
TTCATGCTGTGTGTTACTGTCGTCA
LOC_Os02g48730
Os.7581.1.S1_at--1069--1951Chr02:29824224..29824248 (25 bp)
ACTGTCGTCACCGTTGGGAGCAGAA
LOC_Os02g48730
Os.7581.1.S1_at--646--6851Chr02:29824272..29824296 (25 bp)
GTTTGCGTCTTATCCACTCATTTTT
LOC_Os02g48730
Os.7581.1.S1_at--509--10691Chr02:29824301..29824325 (25 bp)
TTGGTTTGATTCACCCTAGGGTTCT
LOC_Os02g48730
Os.7581.1.S1_at--248--10411Chr02:29824325..29824349 (25 bp)
TTTTGTATATTGTTGCCCTGTCTGT
LOC_Os02g48730
Os.7581.1.S1_at--48--3891Chr02:29824346..29824370 (25 bp)
CTGTCCCGGTTGTTTGCTGTGTTAA
LOC_Os02g48730
Os.7581.1.S1_at--819--1391Chr02:29824380..29824404 (25 bp)
AGACGTACGCTTTGTCAGTTCAAGT
LOC_Os02g48730
Target Sequence 
GACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTGGCCGGCGTTGAGCTAATGATC
AGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACT
GTCGTCACCGTTGGGAGCAGAAGTGGACATTTTTTTTTTNCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGT
TTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGNGTTAGACGT
ACGCTTTGTCAGTTCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis