Browse Element(s) Details


Os.48165.1.A1_at

Description gb:CR278715
DB_XREF= gi:44665281
DB_XREF=CR278715
CLONE=p767d05p5
TID=Os.48165.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48165 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g487909/11AML1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48740Os.23544.1.S1_at11/112+29827488..29832167Fimbrin-like protein 2, putative, expressed
LOC_Os02g48750OsAffx.24789.1.S1_at11/112+29838720..29839364hypothetical protein
LOC_Os02g48760OsAffx.24790.1.S1_at11/112+29842034..29842519hypothetical protein
LOC_Os02g48770Os.11812.1.S1_at11/112+29844503..29846574SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os02g48780NANA2+29847702..29848589BAG domain containing protein, expressed
LOC_Os02g48790Os.8968.2.S1_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.8968.1.S1_x_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.48165.1.A1_at9/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48800OsAffx.3002.1.S1_at10/112+29862249..29863561expressed protein
LOC_Os02g48810Os.6264.1.S1_at11/112+29865499..29869426PHD-finger family protein, expressed
LOC_Os02g48820Os.51793.1.S1_at11/112+29869731..29870836Plastocyanin-like domain containing protein, expressed
LOC_Os02g48830Os.49435.1.S1_at11/112+29871392..2987558865kD microtubule associated protein, putative, expressed
LOC_Os02g48840Os.7957.1.S1_at11/112+29876197..29879372Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48165.1.A1_at--606--8811Chr02:29858399..29858423 (25 bp)
TGTTGTCATTGGACACCGTTTCCCA
LOC_Os02g48790
Os.48165.1.A1_at--969--1091Chr02:29858439..29858463 (25 bp)
AGTGGGCCACCAATTCAGAGATTCA
LOC_Os02g48790
Os.48165.1.A1_at--305--6051Chr02:29858456..29858480 (25 bp)
GAGATTCACTCAGACACATGCATAG
LOC_Os02g48790
Os.48165.1.A1_at--347--7891Chr02:29858588..29858612 (25 bp)
GGTTCAGTGGTTAGGAGGTCACCCA
LOC_Os02g48790
Os.48165.1.A1_at--551--3471Chr02:29858611..29858635 (25 bp)
CAGGGTGCTGTATATGCCGCGCAAA
LOC_Os02g48790
Os.48165.1.A1_at--817--2251Chr02:29858638..29858662 (25 bp)
AAATCACGCTCATCGCCAAGGGAGT
LOC_Os02g48790
Os.48165.1.A1_at--71--2091NONE
ACAGGTCTTGTCTCTTTCGTGGTTA
NONE
Os.48165.1.A1_at--677--9551NONE
TCTTTCGTGGTTAGAGCTGCTCTGC
NONE
Os.48165.1.A1_at--71--10311Chr02:29858417..29858751 (25 bp)
TTTCCCTCTCTTGCATTTGATCTAG
LOC_Os02g48790
Os.48165.1.A1_at--721--4951Chr02:29858739..29858763 (25 bp)
GCATTTGATCTAGCATCGTCATTTT
LOC_Os02g48790
Os.48165.1.A1_at--647--511Chr02:29858753..29858777 (25 bp)
ATCGTCATTTTCAATTGCCTCTCCT
LOC_Os02g48790
Target Sequence 
TGTTGTCATTGGACACCGTTTCCCATCATCTGATTCCCACAGTGGGCCACCAATTCAGAGATTCACTCAGACACATGCAT
AGTAGTAGTGATCACGATTTCATGAGAGAGGGAGAGGGAGAGGCAGGGCACATGGTGGTGGCCATTGGCGATGAAATGAT
TGTAGATAGTGGTGCGGCAGGCAAGTGTGGGTTCAGTGGTTAGGAGGTCACCCAGGGTGCTGTATATGCCGCGCAAAACA
AATCACGCTCATCGCCAAGGGAGTGGATGGACAAACAGACAGGTTGAGCGGACAGGTCTTGTCTCTTTCGTGGTTAGAGC
TGCTCTGCTTTCCCTCTCTTGCATTTGATCTAGCATCGTCATTTTCAATTGCCTCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48165.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis