Browse Element(s) Details


Os.7957.1.S1_at

Description gb:AK102281.1
DB_XREF= gi:32987490
TID=Os.7957.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089F02, full insert sequence.
FL= gb:AK102281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4884011/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48790Os.8968.2.S1_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.8968.1.S1_x_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.48165.1.A1_at9/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48800OsAffx.3002.1.S1_at10/112+29862249..29863561expressed protein
LOC_Os02g48810Os.6264.1.S1_at11/112+29865499..29869426PHD-finger family protein, expressed
LOC_Os02g48820Os.51793.1.S1_at11/112+29869731..29870836Plastocyanin-like domain containing protein, expressed
LOC_Os02g48830Os.49435.1.S1_at11/112+29871392..2987558865kD microtubule associated protein, putative, expressed
LOC_Os02g48840Os.7957.1.S1_at11/112+29876197..29879372Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed
LOC_Os02g48890Os.45161.1.A1_x_at1/112+29902617..29903090hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7957.1.S1_at--3--8391Chr02:29878438..29878462 (25 bp)
GGCGACCACAGGTGCAACTGACAGA
LOC_Os02g48840
Os.7957.1.S1_at--781--2591Chr02:29878849..29878873 (25 bp)
AAGCTTTTCGGACCCAATGTTGGCG
LOC_Os02g48840
Os.7957.1.S1_at--936--2991Chr02:29878864..29878888 (25 bp)
AATGTTGGCGCACCTGCTCAATCGT
LOC_Os02g48840
Os.7957.1.S1_at--295--4831Chr02:29878879..29878903 (25 bp)
GCTCAATCGTCGGTTCCAACTGAAT
LOC_Os02g48840
Os.7957.1.S1_at--73--2551Chr02:29878896..29878920 (25 bp)
AACTGAATCATTTCGTCCTCTTGGA
LOC_Os02g48840
Os.7957.1.S1_at--1130--5011Chr02:29878939..29878963 (25 bp)
GCAGGTGACATCCAAGCGCCCGTAT
LOC_Os02g48840
Os.7957.1.S1_at--681--431Chr02:29878987..29879011 (25 bp)
ATCTTCGAGCGAGTCAACCCAAGTA
LOC_Os02g48840
Os.7957.1.S1_at--475--2111Chr02:29879145..29879169 (25 bp)
ACATGTTCAATCTCCTCTGTAGTGA
LOC_Os02g48840
Os.7957.1.S1_at--523--5291Chr02:29879175..29879199 (25 bp)
GAATGGATATTACTGCCAGGCATAT
LOC_Os02g48840
Os.7957.1.S1_at--312--251Chr02:29879283..29879307 (25 bp)
ATATGCACTGACTGCCAATCATGGC
LOC_Os02g48840
Os.7957.1.S1_at--993--9611Chr02:29879301..29879325 (25 bp)
TCATGGCAAATGGACCTGTGGGTTT
LOC_Os02g48840
Target Sequence 
GGCGACCACAGGTGCAACTGACAGATGCTTCACAGNATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTT
GGCGCACCTGCTCAATCGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACAT
CCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATCTTCGAGCGAGTCAACCCAAGTAATATTCCTAGTAATTTTA
CTTTTGGAGCAATGGAGGCCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGAC
AGCTCATAACAAGTCATAACTCATAAGAGGACCTGACATGTTCAATCTCCTCTGTAGTGATTAGTGAATGGATATTACTG
CCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGCAAATGATGGCA
ANTGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis