Browse Element(s) Details


OsAffx.3002.1.S1_at

Description tigr:9630.m04763
TID=OsAffx.3002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4880010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48750OsAffx.24789.1.S1_at11/112+29838720..29839364hypothetical protein
LOC_Os02g48760OsAffx.24790.1.S1_at11/112+29842034..29842519hypothetical protein
LOC_Os02g48770Os.11812.1.S1_at11/112+29844503..29846574SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os02g48780NANA2+29847702..29848589BAG domain containing protein, expressed
LOC_Os02g48790Os.8968.2.S1_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.8968.1.S1_x_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.48165.1.A1_at9/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48800OsAffx.3002.1.S1_at10/112+29862249..29863561expressed protein
LOC_Os02g48810Os.6264.1.S1_at11/112+29865499..29869426PHD-finger family protein, expressed
LOC_Os02g48820Os.51793.1.S1_at11/112+29869731..29870836Plastocyanin-like domain containing protein, expressed
LOC_Os02g48830Os.49435.1.S1_at11/112+29871392..2987558865kD microtubule associated protein, putative, expressed
LOC_Os02g48840Os.7957.1.S1_at11/112+29876197..29879372Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3002.1.S1_at--670--6031Chr02:29862485..29862509 (25 bp)
GAGATCGTGATGGTGCTGGCCGCCG
LOC_Os02g48800
OsAffx.3002.1.S1_at--630--3951Chr02:29862606..29862630 (25 bp)
CGGTGCGGCCCAAGGATCTGTTCCC
LOC_Os02g48800
OsAffx.3002.1.S1_at--429--451Chr02:29862660..29862684 (25 bp)
ATCTCGGCCTCAACAGGGCCAGGGA
LOC_Os02g48800
OsAffx.3002.1.S1_at--696--9331Chr02:29862723..29862747 (25 bp)
TCGCCGACAGGCTGATGCTCACTAA
LOC_Os02g48800
OsAffx.3002.1.S1_at--612--8331Chr02:29862732..29862754 (23 bp)
GGCTGATGCTCACTAAGCGCAAGAA
LOC_Os02g48800
OsAffx.3002.1.S1_at--402--5531Chr02:29862955..29863435 (25 bp)
GAAAACAGCTCATGTACTGCATGCT
LOC_Os02g48800
OsAffx.3002.1.S1_at--1159--1571NONE
AGCTCATGTACTGCATGCTGGAGGG
NONE
OsAffx.3002.1.S1_at--986--7591Chr02:29863452..29863476 (25 bp)
GGGCAGACCGACTGCAACACTGTGT
LOC_Os02g48800
OsAffx.3002.1.S1_at--289--5151Chr02:29863465..29863489 (25 bp)
GCAACACTGTGTGCCCGTGCCAGGG
LOC_Os02g48800
OsAffx.3002.1.S1_at--241--6011Chr02:29863490..29863514 (25 bp)
GAGAGCATGCGCGTGCTTCTACAGC
LOC_Os02g48800
OsAffx.3002.1.S1_at--363--4911Chr02:29863504..29863528 (25 bp)
GCTTCTACAGCCACATTCCAGTATT
LOC_Os02g48800
Target Sequence 
GAGATCGTGATGGTGCTGGCCGCCGCTGGGGAGGTGAGGGGTGGGAGGGAGCCGACGGCCGCGGAGCGGGCGCTCGCCGC
GGAGGCGAGGGAGAGGCTGGCTGCGGTCGTCACGGAGGGGGCGGTGCGGCCCAAGGATCTGTTCCCCGGGGAGGCCGTGC
GCGCCCTCGTCGAGGATCTCGGCCTCAACAGGGCCAGGGATCCCGCCGCCATGGGGTTCCGCCCGCCCAAGGCTTCCATC
GCCGACAGGCTGATGCTCACTAAGCGCAAGAAAACAGCTCATGTACTGCATGCTGGAGGGGTGGTAGCAGGGGCAGACCG
ACTGCAACACTGTGTGCCCGTGCCAGGGGAGAGCATGCGCGTGCTTCTACAGCCACATTCCAGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis