Browse Element(s) Details


Os.51793.1.S1_at

Description gb:AK063724.1
DB_XREF= gi:32973742
TID=Os.51793.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D09, full insert sequence.
FL= gb:AK063724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4882011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48770Os.11812.1.S1_at11/112+29844503..29846574SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os02g48780NANA2+29847702..29848589BAG domain containing protein, expressed
LOC_Os02g48790Os.8968.2.S1_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.8968.1.S1_x_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.48165.1.A1_at9/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48800OsAffx.3002.1.S1_at10/112+29862249..29863561expressed protein
LOC_Os02g48810Os.6264.1.S1_at11/112+29865499..29869426PHD-finger family protein, expressed
LOC_Os02g48820Os.51793.1.S1_at11/112+29869731..29870836Plastocyanin-like domain containing protein, expressed
LOC_Os02g48830Os.49435.1.S1_at11/112+29871392..2987558865kD microtubule associated protein, putative, expressed
LOC_Os02g48840Os.7957.1.S1_at11/112+29876197..29879372Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51793.1.S1_at--934--8111Chr02:29870078..29870102 (25 bp)
GGACGTGCGTTATGCTGTGCTGCCT
LOC_Os02g48820
Os.51793.1.S1_at--280--3471Chr02:29870026..29870050 (25 bp)
CAGTGGAGCACGGTGTGTTTCGTCT
LOC_Os02g48820
Os.51793.1.S1_at--375--7431Chr02:29870012..29870036 (25 bp)
GTGTTTCGTCTGATCTGTCAATTGT
LOC_Os02g48820
Os.51793.1.S1_at--367--1731Chr02:29869974..29869998 (25 bp)
ACCATGTATATCTTCGCCTAGCCTA
LOC_Os02g48820
Os.51793.1.S1_at--276--4171Chr02:29869960..29869984 (25 bp)
CGCCTAGCCTACTTTCGAGAATAAA
LOC_Os02g48820
Os.51793.1.S1_at--135--171Chr02:29869936..29869960 (25 bp)
ATTTACCGACTTTCTGATCTTACTA
LOC_Os02g48820
Os.51793.1.S1_at--552--6411Chr02:29869921..29869945 (25 bp)
GATCTTACTAGTTCGTAGGCTCGTA
LOC_Os02g48820
Os.51793.1.S1_at--281--7091Chr02:29869888..29869912 (25 bp)
GTCAGGCTGGCCGTAACAACGGTAG
LOC_Os02g48820
Os.51793.1.S1_at--541--7711Chr02:29869845..29869869 (25 bp)
GGGTGATATCTTAGGCTCGTAGCGA
LOC_Os02g48820
Os.51793.1.S1_at--209--7091Chr02:29869816..29869840 (25 bp)
GTCAGACCGGCCGTAACAACGTTAG
LOC_Os02g48820
Os.51793.1.S1_at--585--10871Chr02:29869786..29869810 (25 bp)
TTGGCTATCCTATGGGTGATGTCTC
LOC_Os02g48820
Target Sequence 
GGACGTGCGTTATGCTGTGCTGCCTCCTGTTCCTGGCCATATGAACATGGAGCAGTGGAGCACGGTGTGTTTCGTCTGAT
CTGTCAATTGTGGTGTTGTATTCTACCATGTATATCTTCGCCTAGCCTACTTTCGAGAATAAATTTACCGACTTTCTGAT
CTTACTAGTTCGTAGGCTCGTAGCGAGACAGTCAGGCTGGCCGTAACAACGGTAGTTACCTTGGCCATCCTATGGGTGAT
ATCTTAGGCTCGTAGCGAGACAGTCAGACCGGCCGTAACAACGTTAGTTACCTTGGCTATCCTATGGGTGATGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis