Browse Element(s) Details


Os.6264.1.S1_at

Description gb:AK108806.1
DB_XREF= gi:32994015
TID=Os.6264.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D02, full insert sequence.
FL= gb:AK108806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4881011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48760OsAffx.24790.1.S1_at11/112+29842034..29842519hypothetical protein
LOC_Os02g48770Os.11812.1.S1_at11/112+29844503..29846574SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os02g48780NANA2+29847702..29848589BAG domain containing protein, expressed
LOC_Os02g48790Os.8968.2.S1_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.8968.1.S1_x_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.48165.1.A1_at9/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48800OsAffx.3002.1.S1_at10/112+29862249..29863561expressed protein
LOC_Os02g48810Os.6264.1.S1_at11/112+29865499..29869426PHD-finger family protein, expressed
LOC_Os02g48820Os.51793.1.S1_at11/112+29869731..29870836Plastocyanin-like domain containing protein, expressed
LOC_Os02g48830Os.49435.1.S1_at11/112+29871392..2987558865kD microtubule associated protein, putative, expressed
LOC_Os02g48840Os.7957.1.S1_at11/112+29876197..29879372Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6264.1.S1_at--1104--471Chr02:29868292..29868316 (25 bp)
ATCTGACCATAGTACGATGCCTGAT
LOC_Os02g48810
Os.6264.1.S1_at--707--8831Chr02:29868313..29868337 (25 bp)
TGATATGTCTACAGCCCCACAGATA
LOC_Os02g48810
Os.6264.1.S1_at--384--2791Chr02:29868363..29868387 (25 bp)
AAGATGAAGCTGCATGTGGCCATGA
LOC_Os02g48810
Os.6264.1.S1_at--956--3171Chr02:29868394..29868418 (25 bp)
AATTGTGGACATCAGTGCAGCAGCA
LOC_Os02g48810
Os.6264.1.S1_at--625--3151Chr02:29868461..29868924 (25 bp)
AATTCCATTTGCAGACGCGATCGTG
LOC_Os02g48810
Os.6264.1.S1_at--253--5811Chr02:29868913..29868937 (25 bp)
GACGCGATCGTGATGAAGCCACCTG
LOC_Os02g48810
Os.6264.1.S1_at--617--2631Chr02:29868928..29868952 (25 bp)
AAGCCACCTGTAGTTCGGTTAGTGC
LOC_Os02g48810
Os.6264.1.S1_at--813--351Chr02:29869008..29869032 (25 bp)
ATAAGTTCATCATGTGCTGCCGGCC
LOC_Os02g48810
Os.6264.1.S1_at--702--10611Chr02:29869288..29869312 (25 bp)
TTCGGCTATCACTCCTAGCTATATT
LOC_Os02g48810
Os.6264.1.S1_at--1134--9571Chr02:29869333..29869357 (25 bp)
TCTTCCTCTGCGCTGATCTTATAAA
LOC_Os02g48810
Os.6264.1.S1_at--1007--6111Chr02:29869383..29869407 (25 bp)
GAGTGACTCATAGGTTCTGTCGTAA
LOC_Os02g48810
Target Sequence 
ATCTGACCATAGTACGATGCCTGATATGTCTACAGCCCCACAGATAACATCAAATGGAGTTATGCATTCAAAAGATGAAG
CTGCATGTGGCCATGAAGGTGAAATTGTGGACATCAGTGCAGCAGCAACAGAGGAAAACAATTAGATTCAGATATAGTAG
ATTGCATCCAATTCCATTTGCAGACGCGATCGTGATGAAGCCACCTGTAGTTCGGTTAGTGCCNAGCGTAGCTTCAGTGA
TTAACCATGCTGTCAACATTCTTTTGGACCAGTCACNATAAGTTCATCATGTGCTGCCGGCCATTTCCCATGAGTGCNTA
CTTNCTACTGGACTTGCTGGAATCAATGTAGCGCGCATGAAGGATGTTGTTACCTTACCGTAGTTCCTTCGGCTATCACT
CCTAGCTATATTTAGTTTCTTTACCTGTCTTGTCTTCCTCTGCGCTGATCTTATAAAGGCTGTAATTACATAGGATTTGG
TTGAGTGACTCATAGGTTCTGTCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis