Browse Element(s) Details


Os.20168.1.S1_at

Description gb:AK069099.1
DB_XREF= gi:32979123
TID=Os.20168.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007L05, full insert sequence.
FL= gb:AK069099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4868011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed
LOC_Os02g48680Os.20168.1.S1_at11/112+29794850..29795810expressed protein
LOC_Os02g48680OsAffx.24787.1.S1_at1/112+29794850..29795810expressed protein
LOC_Os02g48690OsAffx.3000.1.S1_at11/112+29799417..29802234expressed protein
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein
LOC_Os02g48710NANA2+29807417..29807626expressed protein
LOC_Os02g48720Os.9282.1.S1_at11/112+29816067..29819384ADP,ATP carrier protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20168.1.S1_at--268--7451Chr02:29795528..29795552 (25 bp)
GTGTCTGTCGGGTCAGTAGCTACGA
LOC_Os02g48680
Os.20168.1.S1_at--1038--7691Chr02:29795537..29795561 (25 bp)
GGGTCAGTAGCTACGATCTTGATGC
LOC_Os02g48680
Os.20168.1.S1_at--217--6431Chr02:29795551..29795575 (25 bp)
GATCTTGATGCGGTGAAACTCTCTA
LOC_Os02g48680
Os.20168.1.S1_at--716--8571Chr02:29795559..29795583 (25 bp)
TGCGGTGAAACTCTCTAGGAAGGAT
LOC_Os02g48680
Os.20168.1.S1_at--260--811Chr02:29795582..29795606 (25 bp)
ATGGTTAGTTTCATTGTTCGGATAA
LOC_Os02g48680
Os.20168.1.S1_at--904--2431Chr02:29795608..29795632 (25 bp)
AAAAGTGCACTGGTGGTAGGCATGA
LOC_Os02g48680
Os.20168.1.S1_at--183--211Chr02:29795649..29795673 (25 bp)
ATTTGGGTGCTTTTGGATGTCGATC
LOC_Os02g48680
Os.20168.1.S1_at--199--6271Chr02:29795664..29795688 (25 bp)
GATGTCGATCATTGCTAGAGTAATT
LOC_Os02g48680
Os.20168.1.S1_at--899--6911Chr02:29795698..29795722 (25 bp)
GTATGCTTACACTATCAAGGAAATC
LOC_Os02g48680
Os.20168.1.S1_at--385--5591Chr02:29795717..29795741 (25 bp)
GAAATCGTAATGTTACTGTCTCGAC
LOC_Os02g48680
Os.20168.1.S1_at--172--1951Chr02:29795731..29795755 (25 bp)
ACTGTCTCGACTTTTACCTGCAAAT
LOC_Os02g48680
Target Sequence 
GTGTCTGTCGGGTCAGTAGCTACGATCTTGATGCGGTGAAACTCTCTAGGAAGGATGGTTAGTTTCATTGTTCGGATAAT
AAAAGTGCACTGGTGGTAGGCATGAGAGTNTGAACTATGAAATTTGGGTGCTTTTGGATGTCGATCATTGCTAGAGTAAT
TTTTTTTTGTGTATGCTTACACTATCAAGGAAATCGTAATGTTACTGTCTCGACTTTTACCTGCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis