Browse Element(s) Details


OsAffx.23960.1.S1_s_at

Description tigr:9629.m06720
TID=OsAffx.23960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6760011/11esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67570Os.14855.1.S1_at11/111+39597394..39601841expressed protein
LOC_Os01g67580Os.33212.2.S1_at11/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67580Os.50194.1.S1_at1/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67590Os.14090.1.S1_a_at11/111+39616212..39623444Peptidase family M3 containing protein, expressed
LOC_Os01g67600OsAffx.23960.1.S1_s_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67600Os.48005.1.S1_x_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67610OsAffx.11775.1.S1_at11/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.2.S1_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.1.S1_x_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67620OsAffx.13122.2.S1_at10/111+39632362..39633060hypothetical protein
LOC_Os01g67620OsAffx.22604.1.S1_x_at1/111+39632362..39633060hypothetical protein
LOC_Os01g67630OsAffx.21788.1.S1_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.1.S1_x_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.2.S1_x_at2/111+39634312..39637150POT family protein, expressed
LOC_Os01g67640OsAffx.21788.2.S1_x_at11/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.21788.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.24785.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67650OsAffx.23961.1.S1_s_at11/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67650OsAffx.23961.2.S1_s_at8/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67660OsAffx.9591.1.S1_x_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.9591.1.S1_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.21787.3.S1_at10/111+39648542..39650049hypothetical protein
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23960.1.S1_s_at--646--3791Chr01:39624129..39624153 (25 bp)
CTCCGAGGACACGAGTTCTCGTATT
LOC_Os01g67600
OsAffx.23960.1.S1_s_at--295--6731Chr01:39624115..39624139 (25 bp)
GTTCTCGTATTAGTAGTTGTAGCAA
LOC_Os01g67600
OsAffx.23960.1.S1_s_at--1124--8771Chr01:39624047..39624071 (25 bp)
TGTTCTTTTTCACCTGGTAATGGGA
LOC_Os01g67600
OsAffx.23960.1.S1_s_at--159--9671Chr01:39624038..39624062 (25 bp)
TCACCTGGTAATGGGAGCAATTGCA
LOC_Os01g67600
OsAffx.23960.1.S1_s_at--982--1471Chr01:39624023..39624047 (25 bp)
AGCAATTGCAAAGTGGAGGCCAGGA
LOC_Os01g67600
OsAffx.23960.1.S1_s_at--121--8451Chr01:39624006..39624030 (25 bp)
GGCCAGGAACCTGTTAGCCTAATGT
LOC_Os01g67600
OsAffx.23960.1.S1_s_at--679--4271Chr01:39623989..39624013 (25 bp)
CCTAATGTGAGTGAGTACTGGGCTT
LOC_Os01g67600
OsAffx.23960.1.S1_s_at--370--4211Chr01:39623959..39623983 (25 bp)
CCCCATTTATTATGGTCTTTGTGAG
LOC_Os01g67600
OsAffx.23960.1.S1_s_at--837--7451Chr01:39623924..39623948 (25 bp)
GTGTGCAAATTGTAGACTGAACTCA
LOC_Os01g67600
OsAffx.23960.1.S1_s_at--723--8971Chr01:39623907..39623931 (25 bp)
TGAACTCAAAGACGATGCTCTTCCC
LOC_Os01g67600
OsAffx.23960.1.S1_s_at--494--4191Chr01:39623884..39623908 (25 bp)
CCCCTGTAGAGCTCAATTCTTTAAT
LOC_Os01g67600
Target Sequence 
CTCCGAGGACACGAGTTCTCGTATTAGTAGTTGTAGCAAATATATCAGAACTGTGAAATAGACTTACGGGAAAGCATCAA
CATGTTCTTTTTCACCTGGTAATGGGAGCAATTGCAAAGTGGAGGCCAGGAACCTGTTAGCCTAATGTGAGTGAGTACTG
GGCTTTTTCCCCCCATTTATTATGGTCTTTGTGAGAGAGAATGTAGTGTGCAAATTGTAGACTGAACTCAAAGACGATGC
TCTTCCCCCTGTAGAGCTCAATTCTTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23960.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis